View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8053_low_4 (Length: 505)
Name: NF8053_low_4
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8053_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 4748819 - 4748450
Alignment:
| Q |
18 |
attacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatctgtattttataaaataa |
117 |
Q |
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| T |
4748819 |
attacgacatgtctctggcgagcaaactatgacggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatctgtattttataaaataa |
4748720 |
T |
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| Q |
118 |
aaaccatccaaagttagtcacatttatgagcatccacgactatagatgtttttgcactatgttttgagtaaattttcttgagtagtatatgttggaacat |
217 |
Q |
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| T |
4748719 |
aaaccatccaaagttagtcacatttatgagcatccacgactatagatgtttttgcactatgttttgagtaaattttcttgagtagtatatgttggaacat |
4748620 |
T |
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| Q |
218 |
tggtgg-aatataaaaagtggtct--taagcagagtctattttgataatttgtgcctttgtctttggagaaattagatattaaaatgatattaacatcat |
314 |
Q |
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| T |
4748619 |
tggtggaaatataaaaagtggtcttataagcagagtcttttttgatattttgtgcctttgtctttggagaaattagatattaaaatgatattaatatcat |
4748520 |
T |
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| Q |
315 |
atttgagtggtcgcagaatcgtaagtaaggttgtgatcaggggcagagccacctattgtccaggggattca |
385 |
Q |
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| T |
4748519 |
atttgagtggtcgcagaatcgt-agtaaggttgtcatcaggggcggagccacctattgtccaggggattca |
4748450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 416 - 489
Target Start/End: Complemental strand, 4748448 - 4748375
Alignment:
| Q |
416 |
tatgaaccccctcaggtatgaatcttgcaccttcattacaccaaatctctctcttctttgcacccaaatacaca |
489 |
Q |
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| T |
4748448 |
tatgaaccccctcaggtatgagtcttgcaccttcattgcaccaaatctctctcttctttgcacccaaatacaca |
4748375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 4756653 - 4756571
Alignment:
| Q |
19 |
ttacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatct |
101 |
Q |
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| T |
4756653 |
ttacgacatgtctctggtgtgcatactatgatgcttggactaccaaacaaatgtgttctatacatacctgtctttccatatct |
4756571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 40875921 - 40875958
Alignment:
| Q |
392 |
ccccaattacccaatgtttttctatatgaaccccctca |
429 |
Q |
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| T |
40875921 |
ccccaattaccctatgtttttctatatcaaccccctca |
40875958 |
T |
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