View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8053_low_6 (Length: 396)

Name: NF8053_low_6
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8053_low_6
NF8053_low_6
[»] chr1 (1 HSPs)
chr1 (17-396)||(2568691-2569061)
[»] chr6 (2 HSPs)
chr6 (290-323)||(7465582-7465615)
chr6 (290-320)||(2424394-2424424)
[»] scaffold1444 (1 HSPs)
scaffold1444 (290-326)||(881-917)
[»] chr8 (2 HSPs)
chr8 (291-326)||(12954835-12954870)
chr8 (290-329)||(24733277-24733316)
[»] chr5 (1 HSPs)
chr5 (289-328)||(24231710-24231749)
[»] chr4 (3 HSPs)
chr4 (296-331)||(40252766-40252801)
chr4 (290-323)||(32692920-32692953)
chr4 (293-325)||(24369515-24369547)
[»] chr3 (3 HSPs)
chr3 (290-320)||(48180273-48180303)
chr3 (290-323)||(30082964-30082997)
chr3 (290-335)||(48322163-48322207)
[»] chr2 (3 HSPs)
chr2 (290-336)||(35022712-35022757)
chr2 (290-323)||(13811144-13811177)
chr2 (296-325)||(42924384-42924413)
[»] chr7 (1 HSPs)
chr7 (290-323)||(35923474-35923507)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 2568691 - 2569061
Alignment:
Q  17 aatatatgaattcctctatcattgaatcagagagttagttcttgtgttctataactaattaagaaagttatataaactatcattatagtttttgatacgt 116  Q
    |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||    
T  2568691 aatatatgaatttctctatcattgaatcacagagttaattcttgtgttctataactaattaagaaagttataaaaactatcgttatagtttttgatatgt 2568790  T
Q  117 ataagagttttaatcctaatcctaacatataacctaatgaaatcaaagttgaatgtacgatctcgaaagataaattttacagacatttatctgttgttgt 216  Q
    ||||||||||||||      |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2568791 ataagagttttaat------cctaacatataacctaatgaaatcaaagttgaatgtacaatctcgaaagataaattttacagacatttatctgttgttgt 2568884  T
Q  217 gaccggaaagcctatcgacttgggaagggaggcaaccacagatcttggagtagtttttgcaacataagcgtggttaaagagtgtcccggagacactcgtt 316  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  2568885 gaccggaatgcctatcgacatgggaagggaggcaaccacagatcttggagtagtttttgcaacataagtgtggttaaagagtgtcccggaggcactcgtt 2568984  T
Q  317 aacattttccttattttaataacatttttgagcatgttgtagatgattattaagcccacttgtgtaccattaaggtacca 396  Q
    ||||||| |||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||    
T  2568985 aacatttcccttattttaataacatttttgagcatgttgta---gattattgagcccacttgtgtaccattaaggtacca 2569061  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 7465582 - 7465615
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattt 323  Q
    ||||||||||||||||||||||||||||||||||    
T  7465582 ttaaagagtgtcccggagacactcgttaacattt 7465615  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 320
Target Start/End: Original strand, 2424394 - 2424424
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaaca 320  Q
    |||||||||||||||||||||||||||||||    
T  2424394 ttaaagagtgtcccggagacactcgttaaca 2424424  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 917 - 881
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattttcc 326  Q
    |||||||||| ||||||||||||||||||||||||||    
T  917 ttaaagagtgccccggagacactcgttaacattttcc 881  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 12954835 - 12954870
Alignment:
Q  291 taaagagtgtcccggagacactcgttaacattttcc 326  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12954835 taaagagtgtctcggagacactcgttaacattttcc 12954870  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 24733277 - 24733316
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattttcctta 329  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  24733277 ttaaagagtgccccggagacactcgttaacatttccctta 24733316  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 24231749 - 24231710
Alignment:
Q  289 gttaaagagtgtcccggagacactcgttaacattttcctt 328  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  24231749 gttaaagagtgttccggaggcactcgttaacattttcctt 24231710  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 40252766 - 40252801
Alignment:
Q  296 agtgtcccggagacactcgttaacattttccttatt 331  Q
    |||| |||||||||||||||||||||||||||||||    
T  40252766 agtgccccggagacactcgttaacattttccttatt 40252801  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 32692953 - 32692920
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattt 323  Q
    |||||||||||||||||| |||||||||||||||    
T  32692953 ttaaagagtgtcccggaggcactcgttaacattt 32692920  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 24369515 - 24369547
Alignment:
Q  293 aagagtgtcccggagacactcgttaacattttc 325  Q
    |||| ||||||||||||||||||||||||||||    
T  24369515 aagattgtcccggagacactcgttaacattttc 24369547  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 320
Target Start/End: Original strand, 48180273 - 48180303
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaaca 320  Q
    |||||||||||||||||||||||||||||||    
T  48180273 ttaaagagtgtcccggagacactcgttaaca 48180303  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 30082964 - 30082997
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattt 323  Q
    ||||||||||||||| ||||||||||||||||||    
T  30082964 ttaaagagtgtcccgaagacactcgttaacattt 30082997  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 48322207 - 48322163
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattttccttattttaa 335  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  48322207 ttaaagagtgccccggag-cactcgttaacattttccttagtttaa 48322163  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 35022712 - 35022757
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattttccttattttaat 336  Q
    |||||||||| || || ||||||||||||||||||||||||||||||    
T  35022712 ttaaagagtgccctgg-gacactcgttaacattttccttattttaat 35022757  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 13811144 - 13811177
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattt 323  Q
    ||||||||||||||||||||||| ||||||||||    
T  13811144 ttaaagagtgtcccggagacactggttaacattt 13811177  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 325
Target Start/End: Complemental strand, 42924413 - 42924384
Alignment:
Q  296 agtgtcccggagacactcgttaacattttc 325  Q
    ||||||||||||||||||||||||||||||    
T  42924413 agtgtcccggagacactcgttaacattttc 42924384  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 35923507 - 35923474
Alignment:
Q  290 ttaaagagtgtcccggagacactcgttaacattt 323  Q
    ||||||||||| ||||||||||||||||||||||    
T  35923507 ttaaagagtgttccggagacactcgttaacattt 35923474  T

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