View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8054_high_1 (Length: 251)
Name: NF8054_high_1
Description: NF8054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8054_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 28477560 - 28477784
Alignment:
| Q |
14 |
atatcggaggaatgttaaaaaatagtaacaacaacacatgnnnnnnnnnnnncttcaacttttgtttaaacctccatgtccatggtgaattttgtgatag |
113 |
Q |
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| T |
28477560 |
atatcggaggaatgttaaaaaatagtaacaacaacacatgttttttctttttcttcaacttttgtttaaacctccatgtccatggtgaattttgtgatag |
28477659 |
T |
|
| Q |
114 |
ggttgcatcatgcccaac---atgacaggatgctgcttccacgtgacctttgataggttacataggggcagcttaaggcgtctaacaagttcatcatcat |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477660 |
ggttgcatcatgcccaacaacatgacaggatgctgcttccacgtgacctttgataggttacataggggcagcttaaggcgtctaacaagttcatcatcat |
28477759 |
T |
|
| Q |
211 |
taggtaatgtttttgcctaattttt |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
28477760 |
taggtaatgtttttgcctaattttt |
28477784 |
T |
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