View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8054_high_3 (Length: 437)
Name: NF8054_high_3
Description: NF8054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8054_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 52 - 275
Target Start/End: Complemental strand, 35153222 - 35153005
Alignment:
| Q |
52 |
taaacatgactgcgaaaaatcattcaaaaatataataattgtacatattttgtttcaatagggactaaaactatttggaaga-aattttgtaggaactaa |
150 |
Q |
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| T |
35153222 |
taaacatgactgcaaaaaatcattcaaaa-tataataattgtacatattt-----caatatggactaaa-ctacttgaaagataattttgtaggaactaa |
35153130 |
T |
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| Q |
151 |
aaattgaagaaatttttccaacgactaaaaatgaaatgatgagattttacaaggacaaaaaagttatttaactctcttttttaaaagaaagggaaataat |
250 |
Q |
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|||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35153129 |
aaattgaagaaatttttccaccggctaaaaatgaaatactgagattttataaggacaaaaaagttatataactctcttttttaaaagaaagggaaataat |
35153030 |
T |
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| Q |
251 |
attcacataattttaaatgattttt |
275 |
Q |
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| T |
35153029 |
attcacataatttttaatgattttt |
35153005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 35153014 - 35152891
Alignment:
| Q |
296 |
aatgatttttaaaaggaaataaaacaattgaaatgtgatctttggttgaaggta---ccaaaatcgattcaaaacacaagtattgaaatacatagttcaa |
392 |
Q |
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| T |
35153014 |
aatgatttttaaa-ggaaataaaacaactgaaatgtgatctttggttgaaggtagtaccaaaatcgattcaaaacaaaagtattgaaatacatagttcaa |
35152916 |
T |
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| Q |
393 |
atcgttctagcaagagattatcaat |
417 |
Q |
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| T |
35152915 |
atcgttatagcaagagtttatcaat |
35152891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 35158169 - 35158121
Alignment:
| Q |
334 |
tctttggttgaaggtaccaaaatcgattcaaaacacaagtattgaaata |
382 |
Q |
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| T |
35158169 |
tctttggttgaaggtaccaaaatcgattcaaaacacaagtattgaaata |
35158121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 19088284 - 19088325
Alignment:
| Q |
38 |
tttttataatattctaaacatgactgcgaaaaatcattcaaa |
79 |
Q |
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| T |
19088284 |
tttttataatattctaaacattactgcaaaaattcattcaaa |
19088325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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