View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8054_high_5 (Length: 301)
Name: NF8054_high_5
Description: NF8054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8054_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 31192687 - 31192419
Alignment:
| Q |
19 |
gaacacatcaggtgtattatgtgcagctcaggatggaaacaaatcattttcatggccaagcaaatatggtttgactgctttttgtggacctgttggtcct |
118 |
Q |
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| T |
31192687 |
gaacacatcaggtgtattatgtgcagctcaggatggaaacaaatcattttcatggccaagcaaatatggtttgactgctttttgtggacctgttggtcct |
31192588 |
T |
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| Q |
119 |
gttggcgaagctgcttgtggcaagtgcttagatgtatcatatgtatgtataatgtttgcagtttagttcttattttctctatgtcaaatagtctggttgg |
218 |
Q |
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| T |
31192587 |
gttggcaaagctgcttgtggcaagtgcttagatgtatcatatgtatgtataatgtttgcagtttagttcttattttctctatgtcaaatagtctggttgg |
31192488 |
T |
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| Q |
219 |
aatctcatacatcacgagttcaaatatctgccccctatttatttgcaggctgcatcagacatatttatt |
287 |
Q |
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| T |
31192487 |
aatctcatacatcacgagttcaaatatctgccccctatttatttgcaggctgcatcagacatatttatt |
31192419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 31175189 - 31175002
Alignment:
| Q |
19 |
gaacacatcaggtgtattatgtgcagctcaggatggaaacaaatcattttcatggccaagcaaatatggtttgactgctttttgtggacctgttggtcct |
118 |
Q |
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| T |
31175189 |
gaacacatcaggtgtgttctgtgcagctcaagatggtaacaaaccattgtcatggcgaagcaaatatggttgggctgccttttgtggacctgttggtcct |
31175090 |
T |
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| Q |
119 |
gttggcgaagctgcttgtggcaagtgcttagatgtatcatatgtatgtataatgtttgcagtttagttcttattttctctatgtcaaat |
207 |
Q |
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| T |
31175089 |
gttggcaaatctgcttgtggcaagtgcttaaatgtat-gtatatatgtataatgttagcactttacttcttattttatttttgtcaaat |
31175002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 31206526 - 31206440
Alignment:
| Q |
19 |
gaacacatcaggtgtattatgtgcagctcaggatggaaacaaatcattttcatggccaagcaaatatggtttgactgctttttgtgg |
105 |
Q |
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||||||| ||||||| ||||||||| |||| ||||| ||||||||||| ||||||| |||||||||||||| | |||| |||||||| |
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| T |
31206526 |
gaacacagcaggtgtgttatgtgcatctcaagatgggaacaaatcattgtcatggcgaagcaaatatggttgggctgccttttgtgg |
31206440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 31143381 - 31143251
Alignment:
| Q |
19 |
gaacacatcaggtgtattatgtgcagctcaggatggaaacaaatcattttcatggccaagcaaatatggtttgactgctttttgtggacctgttggtcct |
118 |
Q |
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| T |
31143381 |
gaacacatctggtgtattttgtgcagctcaggatgggaacaaatcattgtcatggcgtagtgaatttggttgggctgccttctgtggacatg------ct |
31143288 |
T |
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| Q |
119 |
gttggcgaagctgcttgtggcaagtgcttagatgtat |
155 |
Q |
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| T |
31143287 |
gttggcaaaggtgtttgtggcaagtgcttaaatgtat |
31143251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 35929159 - 35929088
Alignment:
| Q |
68 |
tcatggccaagcaaatatggtttgactgctttttgtggacctgttggtcctgttggcgaagctgcttgtggc |
139 |
Q |
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| T |
35929159 |
tcatggcgtagcaaatatggttggactgccttctgtggacctgttggtcctcaaggccaagcttcttgtggc |
35929088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 47583367 - 47583443
Alignment:
| Q |
68 |
tcatggccaagcaaatatggtttgactgctttttgtggacctgttggtcctgttggcgaagctgcttgtggcaagtg |
144 |
Q |
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| T |
47583367 |
tcatggcgtagcaagtatggttggactgctttttgtggccctgttggacctcgtggtcaagcttcttgtggaaagtg |
47583443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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