View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8054_low_2 (Length: 740)
Name: NF8054_low_2
Description: NF8054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8054_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 651; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 15 - 721
Target Start/End: Complemental strand, 39586830 - 39586124
Alignment:
| Q |
15 |
cacagataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586830 |
cacaaataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
39586731 |
T |
|
| Q |
115 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586730 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
39586631 |
T |
|
| Q |
215 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgctatgttgggtgacagagcaagttcatgaggttgtggatgatgcggacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
39586630 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacac |
39586531 |
T |
|
| Q |
315 |
ggaaaatcctttcttgatactaattgattgggtgggagagcatcgaccggttcccggattggcaaggatttattgcggagtaactggtggagcagatgga |
414 |
Q |
| |
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|||| | | ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586530 |
ggaagaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatgga |
39586431 |
T |
|
| Q |
415 |
ccgacatttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtg |
514 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586430 |
ccgacatttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtg |
39586331 |
T |
|
| Q |
515 |
gtgatgcgggctatgttatgccaatgcctagtcctaaaaggaatggtgattggttgctctacatgaatcttcctaaggaatacttgcatttcatggtggc |
614 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586330 |
gtgatgcgggctacgttatgccaatgcctagtcctaaaaggaatggtgattggttgctctacatgaatcttcctaaggaatacttgcatttcatggtggc |
39586231 |
T |
|
| Q |
615 |
tgaagctccccatttctttagaccaatctcatgggattatcttctcaattaaagttttttattactcaattcatttggttgctgtatactcaaaaattta |
714 |
Q |
| |
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| T |
39586230 |
tgaagctccccatttctttagaccaatctcatgggattatcttctcaattaaagttttttattactcaattcatttggttgctgtatactcaaaaattta |
39586131 |
T |
|
| Q |
715 |
aaggcct |
721 |
Q |
| |
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||||||| |
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| T |
39586130 |
aaggcct |
39586124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 37 - 671
Target Start/End: Complemental strand, 39553701 - 39553067
Alignment:
| Q |
37 |
aagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
136 |
Q |
| |
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|||||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| ||| |
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| T |
39553701 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
39553602 |
T |
|
| Q |
137 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
236 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || |||| |
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| T |
39553601 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
39553502 |
T |
|
| Q |
237 |
attaatagaagaacttgttgaaaagtcgctatgttgggtgacagagcaagttcatgaggttgtggatgatgcggacacggaaaatcctttcttgatacta |
336 |
Q |
| |
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|||| |||||| || ||||| || |||||||||||||| | || | |||||||||| || |||| | || | || || | | ||||||| ||| |
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| T |
39553501 |
attagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtcta |
39553402 |
T |
|
| Q |
337 |
attgattgggtgggagagcatcgaccggttcccggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatttgtggtgtcttctg |
436 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||| ||||||||||| || |||||||||| ||| ||||| |||||||| || ||||| | |
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| T |
39553401 |
attgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaacatttgttgtatcttcag |
39553302 |
T |
|
| Q |
437 |
ggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcgggctatgttatgcc |
536 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||| || ||| ||| |||||||||||||| |
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|
| T |
39553301 |
ggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgctggctatgttatgcc |
39553202 |
T |
|
| Q |
537 |
aatgcctagtcctaaaaggaatggtgattggttgctctacatgaatcttcctaaggaatacttgcatttcatggtggctgaagctccccatttctttaga |
636 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| | |||||||||| | ||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
39553201 |
aatgccaagccctaaaaggaatggtgattggttgctctacatgcaccttcctaagggacacttgcacttcatggaggctcaagctccccatttctttaga |
39553102 |
T |
|
| Q |
637 |
ccaatctcatgggattatcttctcaattaaagttt |
671 |
Q |
| |
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|||||||| |||||||| || ||||||||||||| |
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| T |
39553101 |
ccaatctcttgggattacctcatcaattaaagttt |
39553067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 40 - 669
Target Start/End: Complemental strand, 39543679 - 39543050
Alignment:
| Q |
40 |
cgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtgg |
139 |
Q |
| |
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||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| |||||| |
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| T |
39543679 |
cgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtgg |
39543580 |
T |
|
| Q |
140 |
ttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagatt |
239 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || ||||||| |
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|
| T |
39543579 |
ttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatt |
39543480 |
T |
|
| Q |
240 |
aatagaagaacttgttgaaaagtcgctatgttgggtgacagagcaagttcatgaggttgtggatgatgcggacacggaaaatcctttcttgatactaatt |
339 |
Q |
| |
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| |||||| || ||||| || |||||||||||||| | || | |||||||||| || |||| | || | || || | | ||||||| |||||| |
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| T |
39543479 |
agcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaatt |
39543380 |
T |
|
| Q |
340 |
gattgggtgggagagcatcgaccggttcccggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatttgtggtgtcttctgggc |
439 |
Q |
| |
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|||||||||| |||||||||||| ||||| |||||||| ||||||||||| || |||||||||| ||| ||||| ||||||||||| ||||| |||| |
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|
| T |
39543379 |
gattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaacatttgtggtatcttcagggc |
39543280 |
T |
|
| Q |
440 |
aaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcgggctatgttatgccaat |
539 |
Q |
| |
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| |||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||| || ||| ||| ||||||||||||||||| |
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|
| T |
39543279 |
agaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgctggctatgttatgccaat |
39543180 |
T |
|
| Q |
540 |
gcctagtcctaaaaggaatggtgattggttgctctacatgaatcttcctaaggaatacttgcatttcatggtggctgaagctccccatttctttagacca |
639 |
Q |
| |
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||| || ||||||||||||||||||||||||||||||||| | |||||||||| | ||||||| ||||||| || |||| || ||||||||||||||| |
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|
| T |
39543179 |
gccaagccctaaaaggaatggtgattggttgctctacatgcaccttcctaagggacacttgcacttcatggaggtccaagcccctcatttctttagacca |
39543080 |
T |
|
| Q |
640 |
atctcatgggattatcttctcaattaaagt |
669 |
Q |
| |
|
|||| |||||||| || || ||||||||| |
|
|
| T |
39543079 |
gtctcttgggattacctccttaattaaagt |
39543050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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