View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8054_low_3 (Length: 702)

Name: NF8054_low_3
Description: NF8054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8054_low_3
NF8054_low_3
[»] chr7 (22 HSPs)
chr7 (17-410)||(29330381-29330779)
chr7 (179-409)||(110321-110556)
chr7 (165-410)||(41792773-41793023)
chr7 (200-410)||(7253559-7253774)
chr7 (179-410)||(38000256-38000492)
chr7 (165-376)||(38256007-38256223)
chr7 (165-376)||(38263582-38263798)
chr7 (45-410)||(26793422-26793780)
chr7 (177-410)||(15030868-15031107)
chr7 (179-410)||(35583328-35583564)
chr7 (43-168)||(41793053-41793177)
chr7 (43-168)||(113607-113731)
chr7 (43-168)||(15030705-15030829)
chr7 (90-168)||(38000550-38000628)
chr7 (43-168)||(45491214-45491340)
chr7 (87-162)||(7253442-7253517)
chr7 (87-168)||(38255895-38255977)
chr7 (87-168)||(38263470-38263552)
chr7 (342-410)||(33851697-33851765)
chr7 (112-162)||(35583225-35583275)
chr7 (165-205)||(45491144-45491184)
chr7 (17-55)||(24686831-24686869)
[»] chr2 (16 HSPs)
chr2 (427-685)||(9437635-9437902)
chr2 (187-410)||(5462657-5462885)
chr2 (198-410)||(15111635-15111852)
chr2 (242-410)||(5936163-5936331)
chr2 (242-410)||(34950126-34950293)
chr2 (43-168)||(5462467-5462591)
chr2 (43-168)||(34950410-34950535)
chr2 (263-401)||(18964967-18965105)
chr2 (251-335)||(41962562-41962646)
chr2 (112-168)||(5936008-5936064)
chr2 (243-410)||(16414550-16414717)
chr2 (299-410)||(31717140-31717251)
chr2 (17-73)||(15111429-15111485)
chr2 (125-168)||(18965252-18965295)
chr2 (22-68)||(31715554-31715600)
chr2 (314-396)||(33946471-33946553)
[»] chr3 (24 HSPs)
chr3 (165-410)||(41972882-41973132)
chr3 (211-410)||(47373067-47373272)
chr3 (176-410)||(8484690-8484929)
chr3 (214-406)||(3939750-3939947)
chr3 (165-410)||(44205966-44206213)
chr3 (210-410)||(16478673-16478878)
chr3 (210-410)||(48064974-48065180)
chr3 (179-410)||(21448926-21449165)
chr3 (189-406)||(22162777-22163000)
chr3 (165-410)||(49325568-49325818)
chr3 (179-406)||(21978153-21978386)
chr3 (179-406)||(22000584-22000817)
chr3 (43-168)||(41972727-41972852)
chr3 (43-168)||(44205811-44205936)
chr3 (43-168)||(48065251-48065375)
chr3 (179-406)||(18877654-18877888)
chr3 (43-168)||(3939565-3939689)
chr3 (43-168)||(30390069-30390193)
chr3 (43-168)||(21448743-21448868)
chr3 (179-272)||(30389913-30390011)
chr3 (109-168)||(47372932-47372991)
chr3 (120-168)||(49325490-49325538)
chr3 (299-410)||(9332141-9332252)
chr3 (309-379)||(23334086-23334156)
[»] chr1 (26 HSPs)
chr1 (165-410)||(4852990-4853239)
chr1 (165-410)||(10221497-10221746)
chr1 (165-410)||(39599841-39600091)
chr1 (165-410)||(5748106-5748357)
chr1 (165-410)||(7198287-7198538)
chr1 (210-409)||(10310993-10311198)
chr1 (210-410)||(18278147-18278353)
chr1 (242-400)||(17384236-17384394)
chr1 (242-410)||(7562944-7563112)
chr1 (210-338)||(12524019-12524152)
chr1 (87-168)||(12523863-12523944)
chr1 (43-168)||(18278424-18278547)
chr1 (43-168)||(5747952-5748076)
chr1 (43-162)||(14271447-14271564)
chr1 (43-168)||(29946427-29946551)
chr1 (242-327)||(29946649-29946734)
chr1 (43-168)||(7198133-7198257)
chr1 (43-161)||(22333950-22334069)
chr1 (88-168)||(10310837-10310918)
chr1 (43-167)||(30233093-30233212)
chr1 (299-410)||(50890637-50890748)
chr1 (299-410)||(30516731-30516841)
chr1 (165-203)||(14271384-14271422)
chr1 (112-168)||(50890917-50890973)
chr1 (17-68)||(17383994-17384044)
chr1 (17-73)||(30516437-30516493)
[»] chr5 (12 HSPs)
chr5 (179-410)||(24854182-24854419)
chr5 (210-410)||(1709586-1709792)
chr5 (197-370)||(5337003-5337179)
chr5 (43-168)||(24853999-24854124)
chr5 (297-410)||(6431026-6431137)
chr5 (45-168)||(31470317-31470439)
chr5 (287-410)||(41614740-41614863)
chr5 (299-410)||(27950125-27950236)
chr5 (365-410)||(5342537-5342582)
chr5 (112-168)||(1709455-1709511)
chr5 (125-162)||(5336921-5336958)
chr5 (310-379)||(27949443-27949512)
[»] chr8 (8 HSPs)
chr8 (218-410)||(24832375-24832572)
chr8 (88-168)||(15599366-15599446)
chr8 (97-168)||(24832637-24832708)
chr8 (179-319)||(42190904-42191050)
chr8 (298-398)||(38621004-38621104)
chr8 (309-379)||(28285125-28285195)
chr8 (287-379)||(11457716-11457808)
chr8 (125-162)||(42191102-42191139)
[»] chr6 (14 HSPs)
chr6 (210-410)||(13038541-13038746)
chr6 (210-410)||(29436545-29436751)
chr6 (179-338)||(34950522-34950686)
chr6 (217-354)||(18584240-18584382)
chr6 (43-168)||(34950744-34950868)
chr6 (43-168)||(481023-481147)
chr6 (88-168)||(29436812-29436892)
chr6 (112-168)||(13038807-13038863)
chr6 (24-73)||(13038884-13038933)
chr6 (275-399)||(17520529-17520653)
chr6 (165-205)||(13038737-13038777)
chr6 (325-396)||(19626937-19627008)
chr6 (165-203)||(29436744-29436782)
chr6 (299-379)||(20819387-20819467)
[»] chr4 (26 HSPs)
chr4 (179-410)||(13722127-13722364)
chr4 (210-410)||(55609990-55610195)
chr4 (179-410)||(38988970-38989204)
chr4 (171-410)||(40691235-40691481)
chr4 (180-410)||(45657786-45658022)
chr4 (200-410)||(53270891-53271105)
chr4 (179-335)||(40760714-40760875)
chr4 (210-410)||(52917797-52917993)
chr4 (43-168)||(53512610-53512734)
chr4 (44-168)||(38988789-38988912)
chr4 (43-168)||(13752604-13752729)
chr4 (88-168)||(47984654-47984734)
chr4 (43-168)||(52917598-52917722)
chr4 (88-168)||(45657647-45657727)
chr4 (165-241)||(51889382-51889458)
chr4 (87-162)||(40691129-40691204)
chr4 (179-336)||(4352684-4352847)
chr4 (309-399)||(34952983-34953073)
chr4 (165-205)||(53512539-53512579)
chr4 (112-168)||(40760600-40760656)
chr4 (184-229)||(47984771-47984816)
chr4 (109-168)||(4352905-4352964)
chr4 (17-52)||(4353022-4353057)
chr4 (613-668)||(41864880-41864935)
chr4 (125-168)||(51889488-51889531)
chr4 (109-167)||(53271167-53271225)
[»] scaffold0168 (3 HSPs)
scaffold0168 (171-410)||(17123-17359)
scaffold0168 (120-168)||(17395-17443)
scaffold0168 (17-50)||(17482-17515)
[»] scaffold0007 (1 HSPs)
scaffold0007 (242-359)||(250746-250863)
[»] scaffold0001 (1 HSPs)
scaffold0001 (275-379)||(426481-426585)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 29330381 - 29330779
Alignment:
Q  17 gagaaagaagagggtgtgaggaattgtgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaa 116  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |    
T  29330381 gagaaagaagagggtgtgagtatttgtgaggaaatgaagcatatttataggggagggggattaaaaaaaacgtggggaagccatcaatgccggtcaaata 29330480  T
Q  117 acatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaagtttctggtgtaatccggaatacacatatattccggatttcatattcc 216  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  29330481 acgtgtagaaacacgtttttcaacttgaccaccgtccaaaatgtttgaaaaagtttatggtgtaatctgaaatacacatatattccggatttcatattcc 29330580  T
Q  217 ggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgat 311  Q
    ||||||||||||||| || ||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29330581 ggaaacatacgatactggagtgaacaaagggaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgat 29330680  T
Q  312 tcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29330681 tcttttgtgtgtcccacattgcaccaacaatttttgtggtccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 29330779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 179 - 409
Target Start/End: Complemental strand, 110556 - 110321
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||     ||||||||||||||||||||||| |||||||     
T  110556 taatctggaatacatatatattccggatttcatattccggaaacatacgatactgaggtgaacaaagggaaacttgggactttgagtatggagagggttg 110457  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctcta 373  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  110456 gttcggattttagaatctggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacctcta 110357  T
Q  374 taaataggggttcctgttttcattacaattaaacta 409  Q
    ||||||||||| ||||||||||||| || |||||||    
T  110356 taaataggggtccctgttttcattataagtaaacta 110321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 165 - 410
Target Start/End: Complemental strand, 41793023 - 41792773
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||  |||||||||     ||||||||||||||||||    
T  41793023 aaaaatttctggtgtaatccgaaatacacatatattccggatttcatattccgaaaacatacaatattggggtgaacaaagggaaacttgggactttgag 41792924  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacg 359  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |    
T  41792923 tatggtgagggttggttcggattttagaatccagatttattcagcattggattcttttgtgtgtcccacattgcaccaataatttttgtggtccacaagg 41792824  T
Q  360 ctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    | ||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  41792823 cccacatacctctataaataggggtccatgttttcattacaagtaaactac 41792773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 200 - 410
Target Start/End: Original strand, 7253559 - 7253774
Alignment:
Q  200 tccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctgga 294  Q
    ||||||||||||||||  |||||||||||||| |||||||||     ||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  7253559 tccggatttcatattctagaaacatacgatactggggtgaacaaagggaaacttgggactttgagtatggtgagggttggttcggattttagaatccgga 7253658  T
Q  295 tttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttc 394  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||    
T  7253659 tttaatcagcatttgattcttttgtgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacctctataaataggggtccctgttttc 7253758  T
Q  395 attacaattaaactac 410  Q
    ||||||| ||||||||    
T  7253759 attacaagtaaactac 7253774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 179 - 410
Target Start/End: Complemental strand, 38000492 - 38000256
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    |||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||     ||||||||||||||||||| |||||||||||     
T  38000492 taatccagaatacacatatgttccggatttcatatcccggaaacatacgatactggggtgaacaaagggaaacttgggactttgagtgtggtgagggttg 38000393  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctcta 373  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||| |||| ||||  ||||||||||||    
T  38000392 gtttggattttagaatctggatttattcagcattggattcttttgtgtgtcccacattgcaccggcaatttttgtggtccataacgtccacatacctcta 38000293  T
Q  374 taaataggggttcctgttttcattacaattaaactac 410  Q
    ||||||||||| |||||||||||||| | ||||||||    
T  38000292 taaataggggtacctgttttcattactagtaaactac 38000256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 165 - 376
Target Start/End: Original strand, 38256007 - 38256223
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||| |||  ||||||||    
T  38256007 aaaagcttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatactggggtgaacaaagggaaaattgaaactttgag 38256106  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacg 359  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  38256107 tatggtgagggttggttcggattttagaatccgaatttattcagcattggattcttttgtgcgtcccacattgcaccgacaatttttgtggtccacaacg 38256206  T
Q  360 ctcacatacctctataa 376  Q
    | |||||||||||||||    
T  38256207 cccacatacctctataa 38256223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 165 - 376
Target Start/End: Original strand, 38263582 - 38263798
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||| |||  ||||||||    
T  38263582 aaaagcttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatactggggtgaacaaagggaaaattgaaactttgag 38263681  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacg 359  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  38263682 tatggtgagggttggttcggattttagaatccgaatttattcagcattggattcttttgtgcgtcccacattgcaccgacaatttttgtggtccacaacg 38263781  T
Q  360 ctcacatacctctataa 376  Q
    | |||||||||||||||    
T  38263782 cccacatacctctataa 38263798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 45 - 410
Target Start/End: Complemental strand, 26793780 - 26793422
Alignment:
Q  45 aggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttga 144  Q
    |||||||||| ||||||||||| |||||||||||        |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  26793780 aggaaatgaaccatatttatagcggagggggattacaaaaa-cgtggggaagccatcaattccgatcaaaaaacatgtagaaacacgtttttcaacttga 26793682  T
Q  145 ccaccgtccaaaacgtttgaaaaagtttctggtgtaatccggaatacacatatattccggatttcat---attccggaaacatacgatacgggggtgaac 241  Q
    |||||||||||||           | ||||||||||||||| |||     |||| | |||| | |||   ||||||||||||||||||   |||||||||    
T  26793681 ccaccgtccaaaa-----------gcttctggtgtaatccgaaatg----tataattcggaatacattatattccggaaacatacgatgttggggtgaac 26793597  T
Q  242 -----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcacc 336  Q
         |||||||| |||||||||||| ||||||||| |||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||    
T  26793596 aaagggaaacttgagactttgagtatcgtgagggttggttcggattttagaatccagatttatttagcattggattcttttgtgtgtcccacattgcacc 26793497  T
Q  337 gataa-tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    || || |||||||| |||||||||| |||| |||||||||||||||||| | |||||||||||||| ||||||||    
T  26793496 gacaattttttgtggtccacaacgcccacacacctctataaataggggtccttgttttcattacaagtaaactac 26793422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 177 - 410
Target Start/End: Original strand, 15030868 - 15031107
Alignment:
Q  177 tgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggt 271  Q
    |||||||||||||||| |||||||||| | |  ||||||  |||||||| |||   |||||||||     |||||||| |||||||||||||||||||||    
T  15030868 tgtaatccggaatacaaatatattccgaaatatatattctagaaacatatgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggt 15030967  T
Q  272 tcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacct 370  Q
    | ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||    
T  15030968 tggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacgcccacatacct 15031067  T
Q  371 ctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||||| ||| |||||||||||| ||||||||    
T  15031068 ctataaataggggtccctattttcattacaagtaaactac 15031107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 179 - 410
Target Start/End: Original strand, 35583328 - 35583564
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    ||||| ||||||||  | ||||||||||||||||||||  |||||||| ||||  ||||||||     |||||||||||||||||||||||||||||||     
T  35583328 taatctggaatacatgtgtattccggatttcatattccaaaaacatacaatactagggtgaacaacgggaaacttgggactttgagtatggtgagggttg 35583427  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctcta 373  Q
    ||| ||||||||||||  | |||||||||||||| |||| |||| ||||||||| |||||||||| |||||||||| |||||||| | ||||||||||||    
T  35583428 gttaggattttagaataagaatttattcagcattggatttttttttgtgtcccatattgcaccgacaatttttgtggtccacaacacccacatacctcta 35583527  T
Q  374 taaataggggttcctgttttcattacaattaaactac 410  Q
    ||||||||||| |||| |||||||| |||||||||||    
T  35583528 taaataggggtccctgatttcattataattaaactac 35583564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 41793177 - 41793053
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||| ||||||| ||||||||||||||||| |||||        | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41793177 tgagaaaatgaaccatatttataggggaggaggattaaaaaaa-catggggaagccatcaatgccggtcaaaaaacgtgtagaaacacgtttttcaactt 41793079  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||| ||||||||||||    
T  41793078 gaccaccgtccaacacgtttgaaaaa 41793053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 113731 - 113607
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||||||||||| |||        ||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||    
T  113731 tgaggaaatgaaccatatttataggggagggg-attaaaaaaaacgtggggaagccaacaatgctgatcaaaaaacgtgtagaaacacgtttttcaactt 113633  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||| ||||||||||||    
T  113632 gaccaccgtccaacacgtttgaaaaa 113607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 15030705 - 15030829
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||| |||||||||||         ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  15030705 tgaggaaatgaaccatatttatagcggagggggattaaaaaaat-gtggggaagccatcaattccggtcaaaaaacgtgtagaaacacgtttttcaactt 15030803  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
     ||||||||||||||| |||||||||    
T  15030804 aaccaccgtccaaaacatttgaaaaa 15030829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 38000628 - 38000550
Alignment:
Q  90 ggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38000628 ggggaagccatcaatgccggtcaaaaaaagtgtagaaacacatttttcaacttgaccaccgtccaaaacgtttgaaaaa 38000550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 45491340 - 45491214
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaa-catgtagaaacacgtttttcaact 141  Q
    |||||||||||| |||||||||||||||||||| ||        ||||||||||  ||||||| ||||||||||| | ||||||||||| ||||||||||    
T  45491340 tgaggaaatgaaccatatttataggggaggggggtttaaaaaaacgtggggaagatatcaatgtcggtcaaaaaaacgtgtagaaacacatttttcaact 45491241  T
Q  142 tgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||||||||||||||    
T  45491240 tgaccaccgtccaaaacgtttgaaaaa 45491214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 7253442 - 7253517
Alignment:
Q  87 cgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgttt 162  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  7253442 cgtggggaagccatcaatgccggtcaaaaaatgtgtagaaacacgtttttcaacttgaccaccgtctaaaacgttt 7253517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 38255895 - 38255977
Alignment:
Q  87 cgtggggaagccatcaatgccggtcaaaaaaca-tgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38255895 cgtggggaagccatcaatgccggtaaaaaaaaagtgtagaaacacgtttttcaacttgaccaccatccaaaacgtttgaaaaa 38255977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 38263470 - 38263552
Alignment:
Q  87 cgtggggaagccatcaatgccggtcaaaaaaca-tgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38263470 cgtggggaagccatcaatgccggtaaaaaaaaagtgtagaaacacgtttttcaacttgaccaccatccaaaacgtttgaaaaa 38263552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 33851765 - 33851697
Alignment:
Q  342 tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||| |||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  33851765 tttttgtggtccacaacacccacatacctctataaataggggtccttgttttcattacaattaaactac 33851697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 35583225 - 35583275
Alignment:
Q  112 aaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgttt 162  Q
    ||||||| |||| |||||||||||||||||||||||||| |||||||||||    
T  35583225 aaaaaacgtgtaaaaacacgtttttcaacttgaccaccgcccaaaacgttt 35583275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 45491184 - 45491144
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccgga 205  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  45491184 aaaagtttctggtgtaatctggaatacacatatattccgga 45491144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 24686831 - 24686869
Alignment:
Q  17 gagaaagaagagggtgtgaggaattgtgaggaaatgaag 55  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  24686831 gagaaagaagagagtgtgagaaattgtgaggaaatgaag 24686869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 427 - 685
Target Start/End: Original strand, 9437635 - 9437902
Alignment:
Q  427 cttaaatgcttaccaaccaaaaatcttgttgttcagaaatcgtttaagatgaagtgtttgaataggaagaacagta---------tgtcaccagtatcaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |         |||||||||||||||    
T  9437635 cttaaatgcttaccaaccaaaaatcttgttgttcagaaatcgtttaagaggaagtgtttgaataggaagaacagcaagaacagcatgtcaccagtatcaa 9437734  T
Q  518 caccaaactaaaatgagtattttctttctctcaagttctcactcattctcaacctcacatcatcatttggtttcctctaaatctccataggtctttctct 617  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9437735 caccaaactaaaatgagttttttctttctctcaagttctcactcattctcatcctcacatcatcatttggtttcctctaaatctccataggtctttccct 9437834  T
Q  618 ctcatttcttttgattttgcgattggatctgcgattctttctctcccttttgtgatctagaatttttt 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9437835 ctcatttcttttgattttgcgattggatctgcgattctttctctcccttttgtgatctagaatttttt 9437902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 187 - 410
Target Start/End: Original strand, 5462657 - 5462885
Alignment:
Q  187 aatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggat 281  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||     |||||||| |||||||||||||||||||||| |||| |||    
T  5462657 aatacacatatattccgtatttcatattccggaaacatacgatactggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcagat 5462756  T
Q  282 tttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaatagg 381  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  5462757 tttagaatccggatttaatcagcattggattcttttgtgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacctctataaatagg 5462856  T
Q  382 ggttcctgttttcattacaattaaactac 410  Q
    ||| |||||||||||||||| ||||||||    
T  5462857 ggtccctgttttcattacaagtaaactac 5462885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 198 - 410
Target Start/End: Original strand, 15111635 - 15111852
Alignment:
Q  198 attccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctg 292  Q
    ||||||||||||||| |||||||||||||||||| |||||||||     |||||||||||||||| |||||||||||||| |||| |||||||||||  |    
T  15111635 attccggatttcatactccggaaacatacgatactggggtgaacaaagggaaacttgggactttgtgtatggtgagggttggttcagattttagaattcg 15111734  T
Q  293 gatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttt 392  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||||| |||||||    
T  15111735 gatttattcagcattggattcttttgtgtatcccacattgcaccgacaatttttgtggtccacaacgcccagatacctctataaataggggtccctgttt 15111834  T
Q  393 tcattacaattaaactac 410  Q
    ||||||||| ||||||||    
T  15111835 tcattacaagtaaactac 15111852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 242 - 410
Target Start/End: Original strand, 5936163 - 5936331
Alignment:
Q  242 gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa 341  Q
    ||||||| |||||||| |||| ||||||||| ||||||||||||||||| |||||  || |||||| ||||||||||||||||| |||||||||||| ||    
T  5936163 gaaacttcggactttgtgtattgtgagggttggttcggattttagaatccggattgctttagcattggattcttttgtgtgtcctacattgcaccgacaa 5936262  T
Q  342 tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||| |||| ||||| || |||||||||||||||||||| |||||||||||||||| ||||||||    
T  5936263 tttttgtggtccataacgcccatatacctctataaataggggtccctgttttcattacaagtaaactac 5936331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 242 - 410
Target Start/End: Complemental strand, 34950293 - 34950126
Alignment:
Q  242 gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa 341  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||||  ||||  ||||||||| |||||||||||||||||||||||||||||| ||    
T  34950293 gaaacttgggactttgtgtatcgtgagggttggttcggattttagaatccagattgcttcagcattggattcttttgtgtgtcccacattgcaccgacaa 34950194  T
Q  342 tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||| |||||||||| ||||||| ||||||||| ||||| |||||||||||| ||| ||||||||    
T  34950193 tttttgtggtccacaacgcccacatacgtctataaatcggggtccctgttttcatt-caagtaaactac 34950126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 5462467 - 5462591
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  5462467 tgaggaaatgaaccatatttataggggagggggattaaaaaaat-gtggggaagccatcaatgccggtcaaaaaacgtgtggaaacacgtttttcaactt 5462565  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||| ||||||||||    
T  5462566 gaccaccgtccaaaatgtttgaaaaa 5462591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 34950535 - 34950410
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||| ||||||||||||||          ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  34950535 tgaggaaatgaatcatatttgtaggggagggggataaaaaaaaaggtggggaagccatcaatgccggtcaaaaaacgtgtagaaacacatttttcaactt 34950436  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||| |||| ||||    
T  34950435 gaccaccgtccaaaacatttggaaaa 34950410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 263 - 401
Target Start/End: Complemental strand, 18965105 - 18964967
Alignment:
Q  263 ggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctc 362  Q
    |||||||||| |||||||||||| ||||||||    ||||||||| | |||||||||||  |||||||||||| || | ||| |||| |||||||||| |    
T  18965105 ggtgagggttggttcggattttataatctggaaagcttcagcattgggttcttttgtgttgcccacattgcactgacagtttatgtggtccacaacgccc 18965006  T
Q  363 acatacctctataaataggggttcctgttttcattacaa 401  Q
    | ||| |||||||||||||| | ||||||||||||||||    
T  18965005 agataactctataaatagggatccctgttttcattacaa 18964967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 41962646 - 41962562
Alignment:
Q  251 gactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcac 335  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||    
T  41962646 gactttgagtatggtgaaagttggttcggattttagaatctggatttattcagcattggattcttttgtatggaccacattgcac 41962562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 5936008 - 5936064
Alignment:
Q  112 aaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5936008 aaaaaacgtgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 5936064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 16414717 - 16414550
Alignment:
Q  243 aaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataat 342  Q
    ||||||||||||||  ||| |||||||||| |||||||||||| |||  |||    |||| |||| ||||||| ||||||  |||||||||||||| |||    
T  16414717 aaacttgggactttttgtagggtgagggttggttcggattttataatacggaaagcttcaacattagattcttatgtgtgatccacattgcaccgacaat 16414618  T
Q  343 ttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    || |||| ||||||||||  | ||| ||||||||||||||   ||| |||||||| ||| ||||||||    
T  16414617 ttatgtggtccacaacgcctagataactctataaatagggagccctattttcatttcaagtaaactac 16414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 299 - 410
Target Start/End: Original strand, 31717140 - 31717251
Alignment:
Q  299 ttcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcatta 398  Q
    |||| |||| ||||||||||||||  |||||||||||||| | ||| |||| |||||||||  || ||| |||||||||||||| | ||| |||||||||    
T  31717140 ttcatcattggattcttttgtgtgatccacattgcaccgacagtttatgtggtccacaacgtccatataactctataaatagggatccctattttcatta 31717239  T
Q  399 caattaaactac 410  Q
    ||| ||||||||    
T  31717240 caagtaaactac 31717251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 15111429 - 15111485
Alignment:
Q  17 gagaaagaagagggtgtgaggaattgtgaggaaatgaagcatatttataggggaggg 73  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  15111429 gagaaagaagagggtgtgagaaattgtgaggaaatgaaacatatttataagggaggg 15111485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 18965295 - 18965252
Alignment:
Q  125 aaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  18965295 aaacacgttttttgacttgaccaccgtccaaaacgtttgaaaaa 18965252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 31715554 - 31715600
Alignment:
Q  22 agaagagggtgtgaggaattgtgaggaaatgaagcatatttataggg 68  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  31715554 agaagagggtgtgagaaattgtgagaaaatgaagcctatttataggg 31715600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 33946553 - 33946471
Alignment:
Q  314 ttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcat 396  Q
    |||||||||  |||||||||||||| ||||| |||| ||||  |||| || | ||||||||||||||| || || ||||||||    
T  33946553 ttttgtgtggtccacattgcaccgacaatttctgtggtccaggacgcccagaaacctctataaataggtgtccccgttttcat 33946471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 7e-94; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 165 - 410
Target Start/End: Original strand, 41972882 - 41973132
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||     ||||||||||||||||||    
T  41972882 aaaagtttctggtgtaatccggaatacacatatattccggatttcatatgccggaaacatacgatactggggtgaacaaatggaaacttgggactttgag 41972981  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacg 359  Q
    ||||||||||||| ||||||| |||||||||  ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||| ||    
T  41972982 tatggtgagggttggttcggagtttagaatccagatttattcagcattggaatcttttgtgtgtcccacattgcaccgacaatttttgtggtccacatcg 41973081  T
Q  360 ctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    | |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  41973082 cccacatacctctataaataagggtccctgttttcattacaattaaactac 41973132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 211 - 410
Target Start/End: Original strand, 47373067 - 47373272
Alignment:
Q  211 tattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagca 305  Q
    ||||||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  47373067 tattccggaaacatacgatactggggtgaacaacgggaaacttgggactttgagtatggtgagggttggtttggattttagaatccggatttattcagca 47373166  T
Q  306 tttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaata-ggggttcctgttttcattacaatta 404  Q
    || ||||||||||||||||||||||||||| ||||||||||||| ||||||| || |||||||||||||||||| ||||| |||||||||||||||||||    
T  47373167 ttggattcttttgtgtgtcccacattgcactgataatttttgtggtccacaatgcccacatacctctataaatagggggtccctgttttcattacaatta 47373266  T
Q  405 aactac 410  Q
    ||||||    
T  47373267 aactac 47373272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 176 - 410
Target Start/End: Original strand, 8484690 - 8484929
Alignment:
Q  176 gtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgaggg 270  Q
    |||||||||||||||| |||||||| ||||| |  ||||||||||| |||||||||   |||||||     ||||||| |||||||||||||||||||||    
T  8484690 gtgtaatccggaatacgcatatatttcggatgttgtattccggaaaaatacgatactatggtgaacaaagggaaacttaggactttgagtatggtgaggg 8484789  T
Q  271 ttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacct 370  Q
    || ||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||| || ||||||    
T  8484790 tttgtttggattttagaatccggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaatttttatggtccacaacgcccatatacct 8484889  T
Q  371 ctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  8484890 ctataaataggggtccctgttttcattacaagtaaactac 8484929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 214 - 406
Target Start/End: Original strand, 3939750 - 3939947
Alignment:
Q  214 tccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcattt 308  Q
    |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||     
T  3939750 tccggaaacatacgatactggggtgaacaacgggaaacttgggactttgagtatggtgagggttggtttggattttagaatccggatttattcagcattg 3939849  T
Q  309 gattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaa 406  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||    
T  3939850 gattcttttgtgtgtctcacattgcaccgataatttttgtggtccacaacgcccacatatctctataaatatgggtccctgttttcattacaattaaa 3939947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 165 - 410
Target Start/End: Original strand, 44205966 - 44206213
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||||||||||||||||| ||||||    |||| |||||| |  |||||||| |||||||||||   |||||||||     |||||||| |||||||||    
T  44205966 aaaagtttctggtgtaatctggaata----tataatccggaatatatattccgaaaacatacgatgttggggtgaacaaagggaaacttgagactttgag 44206061  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaac 358  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  44206062 tatggtgagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaac 44206161  T
Q  359 gctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    || ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  44206162 gcccacatacctctataaataggggtccctgttttcattacaagtaaactac 44206213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 210 - 410
Target Start/End: Complemental strand, 16478878 - 16478673
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    ||||||||||||||||||||   |||||||||     |||||||| |||||||||||||||||||||| ||||||||||||||||| |  |||||||| |    
T  16478878 atattccggaaacatacgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccgactttattcaac 16478779  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatta 404  Q
    ||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  16478778 attggattcttttgtgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaatta 16478679  T
Q  405 aactac 410  Q
    ||||||    
T  16478678 aactac 16478673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 210 - 410
Target Start/End: Complemental strand, 48065180 - 48064974
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    ||||||||||||||||||||   |||| ||||     |||||||| |||||||||||||||||||||| ||| |||||||||||||  ||||||||||||    
T  48065180 atattccggaaacatacgatgttggggcgaaccaagggaaacttgagactttgagtatggtgagggttggtttggattttagaatccagatttattcagc 48065081  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatt 403  Q
    ||| |||||||||||||||| ||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||| |    
T  48065080 attggattcttttgtgtgtctcacattgcaccgacaattttttgtggtccacaacgcccacatacctctataaatagggggccctgttttcattacaagt 48064981  T
Q  404 aaactac 410  Q
    |||||||    
T  48064980 aaactac 48064974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 179 - 410
Target Start/End: Original strand, 21448926 - 21449165
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    |||| ||||||||||||||||||  || |  ||||||||||||||||||||   |||||||||     |||||||| ||||||||||||||||| ||||     
T  21448926 taattcggaatacacatatattctcgaatatatattccggaaacatacgatgatggggtgaacaaagggaaacttgagactttgagtatggtgaaggttg 21449025  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatac--ct 370  Q
    |||||||||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||  ||    
T  21449026 gttcggatttaagaatccagatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacgcccacatacctct 21449125  T
Q  371 ctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||||| ||| ||||||||||||  |||||||    
T  21449126 ctataaataggggtccctattttcattacaagcaaactac 21449165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 189 - 406
Target Start/End: Original strand, 22162777 - 22163000
Alignment:
Q  189 tacacatatattccggatttcatattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatggtgagggttcgttcggatt 282  Q
    |||||||  |||||||||| | ||||||||||| ||||||||  |||||| ||      |||||||||||||||| |||||||||||||| |||| ||||    
T  22162777 tacacatggattccggattacgtattccggaaaaatacgataatggggtggaccaaaaggaaacttgggactttgtgtatggtgagggttggttcagatt 22162876  T
Q  283 ttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggg 382  Q
    ||||||||||||||  ||||||||| ||||||| |||||| ||||||||||||| | |||||||||| |||||||||| || ||||||||||||||||||    
T  22162877 ttagaatctggattgcttcagcattggattcttctgtgtggcccacattgcacccacaatttttgtggtccacaacgcccaaatacctctataaataggg 22162976  T
Q  383 gttcctgttttcattacaattaaa 406  Q
    || |||||||||||||||| ||||    
T  22162977 gtccctgttttcattacaagtaaa 22163000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 165 - 410
Target Start/End: Original strand, 49325568 - 49325818
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||| |||||||||||||||||||||||||||||| | || |  ||||| || |||||||  ||   |||||||||     |||||||| |||||||||    
T  49325568 aaaagcttctggtgtaatccggaatacacatatatttcagaatatatatttcgaaaacatatcatgttggggtgaacaaagggaaacttgagactttgag 49325667  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaac 358  Q
    ||||||||||||| ||||||||||||||||| | ||||||||| |||| |||| |||||||||||||||| |||||||| || |||||||| || |||||    
T  49325668 tatggtgagggttggttcggattttagaatccgtatttattcaacattggattattttgtgtgtcccaca-tgcaccgacaattttttgtggtctacaac 49325766  T
Q  359 gctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    || ||||||||||||||||| ||||| | |||||||||||||| ||||||||    
T  49325767 gcccacatacctctataaattggggtccttgttttcattacaagtaaactac 49325818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 179 - 406
Target Start/End: Original strand, 21978153 - 21978386
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatggtgagggtt 272  Q
    |||||| || |||||||  |||||||||| | ||||| ||||| ||||||||  |||||| ||      |||||||||||||||| ||||||||||||||    
T  21978153 taatccagattacacatggattccggattacgtattctggaaaaatacgataatggggtggaccaaaaggaaacttgggactttgtgtatggtgagggtt 21978252  T
Q  273 cgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctct 372  Q
     |||||||||||||||| ||||||  || |||||| ||||||| |||||  ||||||||||||| | |||||||||| |||||||||| || ||||||||    
T  21978253 ggttcggattttagaatttggattgctttagcattagattcttctgtgtagcccacattgcacccacaatttttgtggtccacaacgcccaaatacctct 21978352  T
Q  373 ataaataggggttcctgttttcattacaattaaa 406  Q
    |||||||||||| |||||||||||||||| ||||    
T  21978353 ataaataggggtccctgttttcattacaagtaaa 21978386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 179 - 406
Target Start/End: Original strand, 22000584 - 22000817
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatggtgagggtt 272  Q
    |||||| || |||||||  |||||||||| | ||||| ||||| ||||||||  |||||| ||      |||||||||||||||| ||||||||||||||    
T  22000584 taatccagattacacatggattccggattacgtattctggaaaaatacgataatggggtggaccaaaaggaaacttgggactttgtgtatggtgagggtt 22000683  T
Q  273 cgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctct 372  Q
     |||||||||||||||| ||||||  || |||||| ||||||| |||||  ||||||||||||| | |||||||||| |||||||||| || ||||||||    
T  22000684 ggttcggattttagaatttggattgctttagcattagattcttctgtgtagcccacattgcacccacaatttttgtggtccacaacgcccaaatacctct 22000783  T
Q  373 ataaataggggttcctgttttcattacaattaaa 406  Q
    |||||||||||| |||||||||||||||| ||||    
T  22000784 ataaataggggtccctgttttcattacaagtaaa 22000817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 41972727 - 41972852
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||||||||||        |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  41972727 tgaggaaatgaaccatatttataggggagggggattaaaaaaaacgtggggaagccatcaatgccgatcaaaaaacgtgtagaaacacgtttttcaactt 41972826  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||    
T  41972827 gaccaccgtccaaaacgtttgaaaaa 41972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 44205811 - 44205936
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||||||||||||  |        || ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44205811 tgaggaaatgaaccatatttataggggagggggggttaaaaaaacgcggggaagccatcaatgccggtcaaaaaacgtgtagaaacacgtttttcaactt 44205910  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||    
T  44205911 gaccaccgtccaaaacgtttgaaaaa 44205936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 48065375 - 48065251
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||| |||||||||||        |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  48065375 tgaggaaatgaaccatatttatagcggagggggattaaaaaaa-cgtggggaagccatcaattccggtcaaaaaacgtgtagaaacacgcttttcaactt 48065277  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||    
T  48065276 gaccaccgtccaaaacgtttgaaaaa 48065251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 179 - 406
Target Start/End: Complemental strand, 18877888 - 18877654
Alignment:
Q  179 taatccggaatacacatatattccggattt-catattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatggtgagggt 271  Q
    ||||||||| |||||||  |||| |||||| | ||||||||||| ||||||||  |||||| ||      |||||||||| ||||| ||||| |||||||    
T  18877888 taatccggattacacatggattctggatttacgtattccggaaaaatacgataatggggtggaccaaaaggaaacttgggtctttgtgtatgatgagggt 18877789  T
Q  272 tcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctc 371  Q
    |  |||||||||||||||||| ||   |||| |||| ||||||| ||  || ||||||||||||||| |||||||||| |||||||||| || || ||||    
T  18877788 tgtttcggattttagaatctgaatggcttcaacattggattcttctggatggcccacattgcaccgacaatttttgtgctccacaacgcccaaatgcctc 18877689  T
Q  372 tataaataggggttcctgttttcattacaattaaa 406  Q
    ||||||||||||| ||| |||||||||||| ||||    
T  18877688 tataaataggggtccctattttcattacaagtaaa 18877654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 3939565 - 3939689
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||||||||||||| |         ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  3939565 tgaggaaatgaaccatatttataggggagggggagtaaaaaaat-gtggggaagccatcaatgccggtcaaaaaacgtgtagaaacacatttttcaactt 3939663  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||| |||||||||||||||    
T  3939664 gaccaccgtctaaaacgtttgaaaaa 3939689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 30390193 - 30390069
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||||||| ||         | ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  30390193 tgaggaaatgaaccatatttataggggagggggcttaaaataat-gaggggaagccatcaataccggtcaaaaaacgtgtagaaacacgtttttcaactt 30390095  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    || || |||||||||| |||||||||    
T  30390094 gatcatcgtccaaaacatttgaaaaa 30390069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 21448743 - 21448868
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaa-catgtagaaacacgtttttcaact 141  Q
    |||||||||||| |||||||||| ||||||||||||         |||||||| |||||||| |||||||||||| | ||||||||||||||||||||||    
T  21448743 tgaggaaatgaaccatatttatatgggagggggattaaaaaaat-gtggggaaaccatcaattccggtcaaaaaaacgtgtagaaacacgtttttcaact 21448841  T
Q  142 tgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||| |||||||||| |||||||||    
T  21448842 tgaccatcgtccaaaacttttgaaaaa 21448868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 30390011 - 30389913
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggtt 272  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||   ||| |||||     |||||||| ||||||||||||||||||||||    
T  30390011 taatccggaatacacatatattccggaatatatattccggaaacatacgatgttgggatgaacaaatggaaacttgagactttgagtatggtgagggtt 30389913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 47372932 - 47372991
Alignment:
Q  109 gtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  47372932 gtcaaaatacgtgtaaaaacacgtttttcaacttgaccaccgcccaaaacgtttgaaaaa 47372991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 49325490 - 49325538
Alignment:
Q  120 tgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  49325490 tgtaaaaacacgtttttcaacttgaccaccgtcaaaaacgtttgaaaaa 49325538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 9332252 - 9332141
Alignment:
Q  299 ttcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcatta 398  Q
    ||||||||| ||||||||||||||   |||| |||||||| ||||| |||| |||| ||||| || |||  ||| ||||||||| | ||| |||||||||    
T  9332252 ttcagcattggattcttttgtgtgattcacaatgcaccgacaatttatgtggtccataacgcgcagataaatctgtaaatagggatccctattttcatta 9332153  T
Q  399 caattaaactac 410  Q
    ||| ||||||||    
T  9332152 caagtaaactac 9332141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 23334086 - 23334156
Alignment:
Q  309 gattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaata 379  Q
    ||||||||||| ||  |||||||||||||||| ||| |||| |||||||||  || |||||||| ||||||    
T  23334086 gattcttttgtatggaccacattgcaccgatagtttatgtggtccacaacgtccagatacctctgtaaata 23334156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 3e-84; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 165 - 410
Target Start/End: Complemental strand, 4853239 - 4852990
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||     ||||||||||||||||||    
T  4853239 aaaagcttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatattggg-taaacaaagggaaacttgggactttgag 4853141  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacg 359  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||  ||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  4853140 tatggtgagggttggttcggatttcagaatccggatttattcagcattgaattcttttgtgtgtcacacattgcaccgacaatttttgtggtccacaacg 4853041  T
Q  360 ctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    | |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  4853040 cccacatatctctataaataggggtccctgttttcattacaagtaaactac 4852990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 165 - 410
Target Start/End: Original strand, 10221497 - 10221746
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||     |||||||| |||||||||    
T  10221497 aaaagtttttggtgtaatccggaatacaaatatattccggatttcatattccgaaaacatacgatacaggagtgaacaaagggaaacttgagactttgag 10221596  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacg 359  Q
    ||||||||||||| ||||| ||||||||||| | |||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| | |||||||    
T  10221597 tatggtgagggttggttcgaattttagaatccgaatttattcagtatttgattctttt-tgtgtcccacattgcaccgacaatttttgtggttcacaacg 10221695  T
Q  360 ctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10221696 cccacatacctctataaataggggtccctgttttcattacaattaaactac 10221746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 165 - 410
Target Start/End: Complemental strand, 39600091 - 39599841
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||| |||||     ||||||||| ||||||||    
T  39600091 aaaagcttctggtgtaatccggaatacgcatatattccagatttcatattccggaaacatacgacactggg-tgaacagagggaaacttggaactttgag 39599993  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaac 358  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  39599992 tatggtgagggttggttcggattttagaatccggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaac 39599893  T
Q  359 gctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    || |||||||||||||||||| ||||  ||||||||||||||| ||||||||    
T  39599892 gcccacatacctctataaatatgggtcactgttttcattacaagtaaactac 39599841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 165 - 410
Target Start/End: Original strand, 5748106 - 5748357
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||| ||||||||||||||||||||||||||||||||| | |  ||||||| ||||||||||||   | |||||||     |||||||| |||||||||    
T  5748106 aaaagcttctggtgtaatccggaatacacatatattccgaagtatatattccagaaacatacgatgttgaggtgaacaaagggaaacttgagactttgag 5748205  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaac 358  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | || |||||||| |||||||     
T  5748206 tatggtgagggttggttcgaattttagaatccggatttattcagcattggattcttttgtgtgtcccacattgcaccaacaattttttgtggtccacaat 5748305  T
Q  359 gctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    || ||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  5748306 gcccacatacctctataaataggggtccctattttcattacaagtaaactac 5748357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 165 - 410
Target Start/End: Original strand, 7198287 - 7198538
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgag 259  Q
    ||||||||||||||||||| |||||||| |||||||||||| |  ||||| || |||||||||||   |||| ||||     |||||||| |||||||||    
T  7198287 aaaagtttctggtgtaatcaggaatacatatatattccggaatatatatttcgaaaacatacgatgttggggcgaacaaagggaaacttgagactttgag 7198386  T
Q  260 tatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaac 358  Q
    ||||||||| ||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  7198387 tatggtgagtgttggttcggattttagaatccgaatttattcagcattggattcttttgtgtgtcccacattgcaccgataattttttgtggtcaacaac 7198486  T
Q  359 gctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    ||  |||||||||||||| ||||||| |||||||||||||||| ||||||||    
T  7198487 gcctacatacctctataattaggggtccctgttttcattacaagtaaactac 7198538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 210 - 409
Target Start/End: Original strand, 10310993 - 10311198
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    ||||||||||||||||||||   |||||||||     |||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  10310993 atattccggaaacatacgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcagc 10311092  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatt 403  Q
    |||  ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |    
T  10311093 attgtattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagt 10311192  T
Q  404 aaacta 409  Q
    ||||||    
T  10311193 aaacta 10311198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 210 - 410
Target Start/End: Complemental strand, 18278353 - 18278147
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaacgaa-----acttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    ||||||||||||||||||||   ||||||||| ||     ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  18278353 atattccggaaacatacgatgttggggtgaacaaaggaaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcagc 18278254  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatt 403  Q
    ||| ||||||||||||| |||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |    
T  18278253 attggattcttttgtgtatcccacattgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagt 18278154  T
Q  404 aaactac 410  Q
    |||||||    
T  18278153 aaactac 18278147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 242 - 400
Target Start/End: Original strand, 17384236 - 17384394
Alignment:
Q  242 gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa 341  Q
    ||||||| | |||||| |||||||||||||| |||||||||||||||||||||||  |||| |||| ||||||||| ||||||||||||| |||||| ||    
T  17384236 gaaactttgaactttgtgtatggtgagggttggttcggattttagaatctggattgcttcaacattggattcttttatgtgtcccacattccaccgacaa 17384335  T
Q  342 tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattaca 400  Q
    ||||| ||||||| ||| | ||||||||||||||||||||||| | |||||||||||||    
T  17384336 tttttatgatccataacacccacatacctctataaataggggtccttgttttcattaca 17384394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 242 - 410
Target Start/End: Original strand, 7562944 - 7563112
Alignment:
Q  242 gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa 341  Q
    |||||||  ||||||| |||||||||| ||| ||||||||||||||||| |||||  |||| ||||  ||||||||||||| ||||||||||||||| ||    
T  7562944 gaaacttaagactttgtgtatggtgagtgttggttcggattttagaatccggattgcttcaacattgaattcttttgtgtggcccacattgcaccgacaa 7563043  T
Q  342 tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||| |   |||||||||| || |||||||||||||||||||| | |||||||||||||| ||||||||    
T  7563044 ttttagcagtccacaacgcccagatacctctataaataggggtccatgttttcattacaagtaaactac 7563112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 210 - 338
Target Start/End: Original strand, 12524019 - 12524152
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    |||||||| |||||||||||   |||||||||     |||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  12524019 atattccgaaaacatacgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcagc 12524118  T
Q  305 atttgattcttttgtgtgtcccacattgcaccga 338  Q
    ||| ||||||||||||| ||||||||||||||||    
T  12524119 attggattcttttgtgtttcccacattgcaccga 12524152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 12523863 - 12523944
Alignment:
Q  87 cgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12523863 cgtggggaagccatcaattccggtcaaaaaacgtgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 12523944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 18278547 - 18278424
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||| |||||||||| |||        |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  18278547 tgaggaaatgaaccatatttacaggggaggggaattaaaaaa--cgtggggaagccatcaattccggtcaaaaaacgtgtaaaaacacgtttttcaactt 18278450  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||    
T  18278449 gaccaccgtccaaaacgtttgaaaaa 18278424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 5747952 - 5748076
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||||||| ||        |||||| ||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  5747952 tgaggaaatgaaccatatttataggggaggggggttaaaaaaa-cgtgggaaagccatcaattccggtcaaaaaatgtgtagaaacacgtttttcaactt 5748050  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||| |||||||||    
T  5748051 gaccaccgtccaaaacatttgaaaaa 5748076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 14271564 - 14271447
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||||||||||||  |         ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  14271564 tgaggaaatgaaccatatttataggggaggggg--ttaaaaaaatgtggggaagccatcaatgccggtgaaaaaacgtgtagaaacacgtttttcaactt 14271467  T
Q  143 gaccaccgtccaaaacgttt 162  Q
    ||||||||||||||||||||    
T  14271466 gaccaccgtccaaaacgttt 14271447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 29946427 - 29946551
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||| |||||||||||        | ||||||| ||||||||  |||||||||||| |||||||||||||||||||||||    
T  29946427 tgaggaaatgaaccatatttatagcggagggggattaaaaaaa-catggggaatccatcaatttcggtcaaaaaacgtgtagaaacacgtttttcaactt 29946525  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||| |||||||||    
T  29946526 gaccaccgtccaaaacatttgaaaaa 29946551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 29946649 - 29946734
Alignment:
Q  242 gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtccca 327  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||| | |||||||||||||| |||||||||||||||||||    
T  29946649 gaaacttgagactttgagtatggtgagggttggttcggattttataatccgaatttattcagcattggattcttttgtgtgtccca 29946734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 7198133 - 7198257
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||| |||||||||||        |||| | ||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  7198133 tgaggaaatgaaccatatttatagcggagggggattaaaaaaa-cgtgagaaagccatcaattccggtcaaaaaatgtgtagaaacacgtttttcaactt 7198231  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||  |||||||||||||||||||    
T  7198232 gaccaaggtccaaaacgtttgaaaaa 7198257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 22333950 - 22334069
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaa-catgtagaaacacgtttttcaact 141  Q
    |||| ||||||| ||||||||||| |||||||||||        ||||| ||||||||||||  ||||||||||| | ||||||||||||||||||||||    
T  22333950 tgagaaaatgaatcatatttatagtggagggggattaaaaaaaacgtggagaagccatcaatttcggtcaaaaaaacgtgtagaaacacgtttttcaact 22334049  T
Q  142 tgaccaccgtccaaaacgtt 161  Q
    ||||||||||||||||||||    
T  22334050 tgaccaccgtccaaaacgtt 22334069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 10310837 - 10310918
Alignment:
Q  88 gtggggaagccatcaatgccggtcaaaaaa-catgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||| || || |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10310837 gtggggaagccatcaattccagtaaaaaaaacgtgtagaaacacatttttcaacttgaccaccgtccaaaacgtttgaaaaa 10310918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 30233212 - 30233093
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||||||||          |||||  ||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  30233212 tgaggaaatgaaccatatttataggggaggggga-----aaaaacgtggaaaagtcatcaatgccggtcaaaaaacgtgtggaaacacgtttttcaactt 30233118  T
Q  143 gaccaccgtccaaaacgtttgaaaa 167  Q
    ||||||| | ||||| |||||||||    
T  30233117 gaccaccattcaaaatgtttgaaaa 30233093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 50890748 - 50890637
Alignment:
Q  299 ttcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcatta 398  Q
    |||| |||| ||||||||||||||  |||||||||||||| | |||  ||| |||||||||| || ||| ||||||||||||||||  ||||||||||||    
T  50890748 ttcaacattggattcttttgtgtgatccacattgcaccgacagtttaagtggtccacaacgcccaaataactctataaataggggtcactgttttcatta 50890649  T
Q  399 caattaaactac 410  Q
    ||| ||||||||    
T  50890648 caagtaaactac 50890637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 410
Target Start/End: Original strand, 30516731 - 30516841
Alignment:
Q  299 ttcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcatta 398  Q
    |||| ||||||||||| |||| ||  |||||||||||| | | ||| |||| |||||||||| || ||| |||||||||||||||| |||||||| || |    
T  30516731 ttcaacatttgattctcttgt-tgatccacattgcaccaagagtttatgtggtccacaacgcccaaataactctataaataggggtccctgttttaatca 30516829  T
Q  399 caattaaactac 410  Q
    ||| ||||||||    
T  30516830 caagtaaactac 30516841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 14271422 - 14271384
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccg 203  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  14271422 aaaagtttctggtttaatccggaatacacatatattccg 14271384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 50890973 - 50890917
Alignment:
Q  112 aaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||| |||| |||||||||||||||||||||||||| |||| ||  ||||||||    
T  50890973 aaaaaacgtgtaaaaacacgtttttcaacttgaccaccgcccaacacaattgaaaaa 50890917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 17383994 - 17384044
Alignment:
Q  17 gagaaagaagagggtgtgaggaattgtgaggaaatgaagcatatttataggg 68  Q
    ||||||||||| |||||||| |||||||||||||| |||| |||||||||||    
T  17383994 gagaaagaagaaggtgtgagaaattgtgaggaaat-aagcctatttataggg 17384044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 30516437 - 30516493
Alignment:
Q  17 gagaaagaagagggtgtgaggaattgtgaggaaatgaagcatatttataggggaggg 73  Q
    ||||||||||| |||||||  | || |||| |||||||||||||||||| |||||||    
T  30516437 gagaaagaagaaggtgtgacaatttttgagaaaatgaagcatatttatacgggaggg 30516493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 179 - 410
Target Start/End: Original strand, 24854182 - 24854419
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    ||||||||||||||||||||||||||| |  ||||| | |||||||||||| | |||||||||     |||||||| ||||||||||||||||||||||     
T  24854182 taatccggaatacacatatattccggaatatatattaccgaaacatacgatgctggggtgaacaaagggaaacttgagactttgagtatggtgagggttg 24854281  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacctct 372  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||    
T  24854282 gttcggattttagaatccggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacgcccacatacctct 24854381  T
Q  373 ataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  24854382 ataaataggggtccctgttttcattacaagtaaactac 24854419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 210 - 410
Target Start/End: Original strand, 1709586 - 1709792
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    ||||||||||||||||||||   |||||||||     |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  1709586 atattccggaaacatacgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatctgaatttattcagc 1709685  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatt 403  Q
    |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||   ||||||||||||||||    
T  1709686 atttgattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacgctcacatatctctataaataggggtctttgttttcattacaatt 1709785  T
Q  404 aaactac 410  Q
    |||||||    
T  1709786 aaactac 1709792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 197 - 370
Target Start/End: Original strand, 5337003 - 5337179
Alignment:
Q  197 tattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatct 291  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||      ||| ||||||||||||||||||||||||||| |||||||||||||||||     
T  5337003 tattccggatttcatattccgaaaacatacgatactggggtgaattacgagaaccttgggactttgagtatggtgagggttggttcggattttagaatcc 5337102  T
Q  292 ggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacct 370  Q
    ||||||||||| |||| ||||||||  |||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  5337103 ggatttattcatcattggattcttt--tgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacct 5337179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 24853999 - 24854124
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||||| ||||        ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  24853999 tgaggaaatgaaccatatttataggggagggagattaaaaaaaacgtggagaagccatcaatgtcggtcaaaaaacgtgtagaaacacgtttttcaactt 24854098  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||| |||||||||||||||||    
T  24854099 gaccaccgcccaaaacgtttgaaaaa 24854124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 6431026 - 6431137
Alignment:
Q  297 tattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcat 396  Q
    ||||||||||| |||| |||||||  |||||||||||||||| |||||||||| |||| ||||| |||||||||| |||||||||||| |||||||||||    
T  6431026 tattcagcattggatttttttgtg--tcccacattgcaccgacaatttttgtggtccataacgcccacatacctcaataaataggggtccctgttttcat 6431123  T
Q  397 tacaattaaactac 410  Q
    ||||||||||||||    
T  6431124 tacaattaaactac 6431137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 31470317 - 31470439
Alignment:
Q  45 aggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttga 144  Q
    |||||||||||| ||||||||||||||||||||          ||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||||    
T  31470317 aggaaatgaagcctatttataggggagggggatgaaaagaag-gtggggaaggcattaaatccggtcaaaaaacatgtagaaacacgtttttcaacttga 31470415  T
Q  145 ccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||| |||| ||||||||||    
T  31470416 ccaccgtcgaaaaagtttgaaaaa 31470439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 287 - 410
Target Start/End: Original strand, 41614740 - 41614863
Alignment:
Q  287 aatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttc 386  Q
    ||||||||||  ||||| ||| |||||||||||||| |||||||| |||||| | ||||| || |||||||||  || ||||||||||||| |||| | |    
T  41614740 aatctggattgcttcagtattggattcttttgtgtgacccacatttcaccgacagtttttatggtccacaacggccagatacctctataaaaagggatcc 41614839  T
Q  387 ctgttttcattacaattaaactac 410  Q
    ||||||||||||||||||||||||    
T  41614840 ctgttttcattacaattaaactac 41614863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 27950236 - 27950125
Alignment:
Q  299 ttcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcatta 398  Q
    ||||||||  ||||||||||||||  ||||| |||||||| ||||| |||| || ||||||| || |||||||||||||||||||| | |||||||||||    
T  27950236 ttcagcataagattcttttgtgtgatccacaatgcaccgacaatttatgtggtctacaacgcccaaatacctctataaataggggtccatgttttcatta 27950137  T
Q  399 caattaaactac 410  Q
    ||| ||||||||    
T  27950136 caagtaaactac 27950125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 5342537 - 5342582
Alignment:
Q  365 atacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  5342537 atacctctataaataggggtccctgttttcattacaattaaactac 5342582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 1709455 - 1709511
Alignment:
Q  112 aaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  1709455 aaaaaacgtgtagaaacacgtttttcaacttaaccgtcgtccaaaacgtttgaaaaa 1709511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 5336921 - 5336958
Alignment:
Q  125 aaacacgtttttcaacttgaccaccgtccaaaacgttt 162  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5336921 aaacacgtttttcaacttgaccaccgcccaaaacgttt 5336958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 27949512 - 27949443
Alignment:
Q  310 attcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaata 379  Q
    ||||||||||| |  ||||||||||||||||||||||||| ||||||||   || | |||||||||||||    
T  27949512 attcttttgtgggaaccacattgcaccgataatttttgtggtccacaacatccataaacctctataaata 27949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 218 - 410
Target Start/End: Complemental strand, 24832572 - 24832375
Alignment:
Q  218 gaaacatacgatacgggggtgaacgaa-----acttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgatt 312  Q
    |||||||||||||| ||||||||| ||     |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  24832572 gaaacatacgatactggggtgaacaaagggagacttgggactttgagtatggtgagggtttgttcggattttacaatctggatttattcagcattggatt 24832473  T
Q  313 cttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||||||||||||||||| ||||  |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24832472 cttttgtgtgtcccacattgcaccgacaattcctgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaattaaactac 24832375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 15599366 - 15599446
Alignment:
Q  88 gtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15599366 gtgggaaagccatcaattccggtcaaaaaacgtgtagaaacacgtttttcaacttaaccaccgtccaaaacgtttgaaaaa 15599446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 24832708 - 24832637
Alignment:
Q  97 ccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  24832708 ccatcaatgccggtcaaaaaacgtgtagaaacacggttttcaacttaaccaccgtccaaaatgtttgaaaaa 24832637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 42191050 - 42190904
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatggtgagggtt 272  Q
    |||||| ||| | |||||||||||||||||  ||||| ||||| |||||||   || ||||||      |||||||||||||||| ||||||||| ||||    
T  42191050 taatccagaacagacatatattccggattttgtattctggaaaaatacgatcatggcgtgaaccaaagggaaacttgggactttgtgtatggtgatggtt 42190951  T
Q  273 cgttcggattttagaatctggatttattcagcatttgattcttttgt 319  Q
     ||||||||||||||||| | |||||||||||||| |||||||||||    
T  42190950 ggttcggattttagaatccgaatttattcagcattggattcttttgt 42190904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 298 - 398
Target Start/End: Original strand, 38621004 - 38621104
Alignment:
Q  298 attcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcatt 397  Q
    ||||||||| |||||||||||||||  ||||||||| ||||||||||||||| ||||||||   || || |||||||||||| | |||  ||||||||||    
T  38621004 attcagcatatgattcttttgtgtgatccacattgcgccgataatttttgtggtccacaacatccaaatgcctctataaataagtgtttatgttttcatt 38621103  T
Q  398 a 398  Q
    |    
T  38621104 a 38621104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 28285195 - 28285125
Alignment:
Q  309 gattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaata 379  Q
    ||||||||| ||||  |||||||||||||||| ||| |||| ||| |||||| || |||||||||||||||    
T  28285195 gattcttttatgtggtccacattgcaccgatagtttctgtggtccgcaacgcccatatacctctataaata 28285125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 379
Target Start/End: Complemental strand, 11457808 - 11457716
Alignment:
Q  287 aatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaata 379  Q
    ||||||||||  ||||||||  ||||||||||| ||  ||||| |||||||| ||||| |||| |||||||||  || | |||||||||||||    
T  11457808 aatctggattccttcagcataggattcttttgtatggaccacaatgcaccgacaatttatgtggtccacaacgtccagagacctctataaata 11457716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 42191139 - 42191102
Alignment:
Q  125 aaacacgtttttcaacttgaccaccgtccaaaacgttt 162  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  42191139 aaacccgtttttcaacttgaccaccgcccaaaacgttt 42191102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 210 - 410
Target Start/End: Complemental strand, 13038746 - 13038541
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    |||||||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  13038746 atattccggaaacatacgatactggggtgaacaaagggaaacttgggactttgagtatggtgagggttggatcggattttagaatctggatttattcagc 13038647  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatta 404  Q
    |||  |||||||||||| |||||||||||||||| ||||| |||| || ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  13038646 attgcattcttttgtgtttcccacattgcaccgacaatttatgtggtcaacaacgcccacatacctctataaataggggtccttgttttcattacaatta 13038547  T
Q  405 aactac 410  Q
    ||||||    
T  13038546 aactac 13038541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 210 - 410
Target Start/End: Complemental strand, 29436751 - 29436545
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    |||||||| |||||||||||   |||||||||     |||||||| |||||||||||||||||||||| ||||||||||||||||| | ||||||||| |    
T  29436751 atattccgaaaacatacgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccgaatttattcaac 29436652  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatt 403  Q
    ||| |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |    
T  29436651 attggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagt 29436552  T
Q  404 aaactac 410  Q
    |||||||    
T  29436551 aaactac 29436545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 179 - 338
Target Start/End: Complemental strand, 34950686 - 34950522
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaacgaa-----acttgggactttgagtatggtgagggttc 273  Q
    ||||| |||||||||||||||||| || |  ||||||||||||||||||||   ||||||||| ||     ||||| ||||||||||||||||||||||     
T  34950686 taatctggaatacacatatattccagaatatatattccggaaacatacgatgttggggtgaacaaaggaaaacttgagactttgagtatggtgagggttg 34950587  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccga 338  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  34950586 gttcggattttagaatccggatttattcaacattggattcttttgtgtgtcccacattgcaccga 34950522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 217 - 354
Target Start/End: Complemental strand, 18584382 - 18584240
Alignment:
Q  217 ggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgat 311  Q
    ||||||||||||||| |||||||||     |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |||| |||    
T  18584382 ggaaacatacgatactggggtgaacaaagggaaacttgggactttgagtatggtgatggttggttcggattttagaatccggatttattcaacattggat 18584283  T
Q  312 tcttttgtgtgtcccacattgcaccgataatttttgtgatcca 354  Q
    |||||||||| |||||||||||||||| ||||| |||| ||||    
T  18584282 tcttttgtgtctcccacattgcaccgacaatttatgtggtcca 18584240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 34950868 - 34950744
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||| |||||||||||        |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  34950868 tgaggaaatgaaccatatttatagcggagggggattaaaaaaa-cgtggggaagccatcaattccggtcaaaaaacgtgtagaaacacgtttttcaactt 34950770  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||    
T  34950769 gaccaccgtccaaaacgtttgaaaaa 34950744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 481147 - 481023
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||| |||||||||||         ||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||    
T  481147 tgaggaaatgaatcatatttatagtggagggggattaaaaaaat-gtggggaagccatcaattccggtcaaaaaacgtgtagaaacacatttttcgactt 481049  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||| |||||||||||||||    
T  481048 gaccaccgtcaaaaacgtttgaaaaa 481023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 29436892 - 29436812
Alignment:
Q  88 gtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29436892 gtggagaagccatcaattccgatcaaaaaacgtgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 29436812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 13038863 - 13038807
Alignment:
Q  112 aaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13038863 aaaaaacgtgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 13038807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 13038933 - 13038884
Alignment:
Q  24 aagagggtgtgaggaattgtgaggaaatgaagcatatttataggggaggg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13038933 aagagggtgtgaggaattgtgaggaaatgaagcatatttataggggaggg 13038884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 275 - 399
Target Start/End: Complemental strand, 17520653 - 17520529
Alignment:
Q  275 ttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctat 374  Q
    |||||||| || |||||| ||||| |||||||  ||||| ||| ||||  |||||||||||||| | ||| |||| |||||||| |  | ||||||||||    
T  17520653 ttcggattatataatctgaatttactcagcataggattcctttttgtgatccacattgcaccgacagtttctgtggtccacaacacctagatacctctat 17520554  T
Q  375 aaataggggttcctgttttcattac 399  Q
    ||||| | |||||| ||||||||||    
T  17520553 aaataagtgttcctattttcattac 17520529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 13038777 - 13038737
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccgga 205  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  13038777 aaaagtttatggtgtaatccggaatacacatatattccgga 13038737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 19627008 - 19626937
Alignment:
Q  325 ccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcat 396  Q
    |||||||||||||| |||||||||| ||||  | || || ||||||||||||||||| || | |||||||||    
T  19627008 ccacattgcaccgacaatttttgtggtccatgatgcccagatacctctataaataggtgtccttgttttcat 19626937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 29436782 - 29436744
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccg 203  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  29436782 aaaagcttatggtgtaatccggaatacacatatattccg 29436744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 20819467 - 20819387
Alignment:
Q  299 ttcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaata 379  Q
    |||| ||| |||||||||||| ||  ||||| |||||||| |||||| ||| |||||||||  || |||||||| ||||||    
T  20819467 ttcaacatatgattcttttgtatggaccacaatgcaccgacaattttcgtggtccacaacgtccagatacctctttaaata 20819387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 179 - 410
Target Start/End: Complemental strand, 13722364 - 13722127
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    |||||||||||||||||||||| |||| |  ||||||| ||||||||||||   |||||||||     |||||||| ||||||||||||||||||||||     
T  13722364 taatccggaatacacatatattgcggaatatatattccagaaacatacgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttg 13722265  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctcacatacctct 372  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| | || |||||||| |||||||||| |||||||||||    
T  13722264 gttcggattttagaatccagatttattcagcattggattcttttgtgtgtcccacattgcaccaacaattttttgtggtccacaacgcccacatacctct 13722165  T
Q  373 ataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  13722164 ataaataggggtccctgttttcattacaagtaaactac 13722127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 210 - 410
Target Start/End: Original strand, 55609990 - 55610195
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    ||||||||||||||||||||   |||||||||     |||||||| |||||||||||||||||||||| ||||||||||||||||| |  |||||||| |    
T  55609990 atattccggaaacatacgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccgactttattcaac 55610089  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatta 404  Q
    ||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  55610090 attggattcttttgtgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaatta 55610189  T
Q  405 aactac 410  Q
    ||||||    
T  55610190 aactac 55610195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 179 - 410
Target Start/End: Original strand, 38988970 - 38989204
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    ||||||||||||||  ||||||| |||||||||||||| |||||||||||||| ||||||| |     ||||||||  |||||||||||||||||||||     
T  38988970 taatccggaataca--tatattctggatttcatattccagaaacatacgatactggggtgagcaaagggaaacttgaaactttgagtatggtgagggttg 38989067  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctcta 373  Q
    |||||||||||| ||| |||| |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||    
T  38989068 gttcggattttaaaatttggacttattcagcattcgattcatttgtgtgtcccacatttcaccgacaatttttgtggtccacaacgcccacatacctcta 38989167  T
Q  374 taaataggggttcctgttttcattacaattaaactac 410  Q
    ||||||||||| ||| |||||||| ||| ||||||||    
T  38989168 taaataggggtccctattttcattgcaagtaaactac 38989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 171 - 410
Target Start/End: Original strand, 40691235 - 40691481
Alignment:
Q  171 ttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatac-gggggtgaac-----gaaacttgggactttgagtatgg 264  Q
    |||||||||||||| ||||||||||||||| || | |  ||||||| ||||||||||||   ||||||||||     |||||||| |||||||||||| |    
T  40691235 ttctggtgtaatccagaatacacatatatttcgtaatatatattccagaaacatacgatgttgggggtgaacaaagggaaacttgagactttgagtattg 40691334  T
Q  265 tgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa-tttttgtgatccacaacgctca 363  Q
    |||||||| ||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||||||||| ||    
T  40691335 tgagggttggttcggattttagaatccggatttattcaacattggattcttttttgtgtcccacattgcaccgacaattttttgtggtccacaacgccca 40691434  T
Q  364 catacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  40691435 catacctctataaataggggtctctgttttcattacaagtaaactac 40691481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 180 - 410
Target Start/End: Original strand, 45657786 - 45658022
Alignment:
Q  180 aatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatggtgagggttc 273  Q
    |||||||| ||||||||||||||| ||| |||||||| |||| ||| |||   || ||||||      |||||||| ||||||| ||||||||||| ||     
T  45657786 aatccggattacacatatattccgaattacatattccagaaaaataagatcatggcgtgaaccaaagggaaacttgagactttgtgtatggtgaggattg 45657885  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctcta 373  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||    
T  45657886 gttcgaattttagaatccggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaatttttgtgatccacaacacccagatacctcta 45657985  T
Q  374 taaataggggttcctgttttcattacaattaaactac 410  Q
    ||||||| ||| ||||| |||||||||| ||||||||    
T  45657986 taaatagtggtccctgtgttcattacaagtaaactac 45658022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 200 - 410
Target Start/End: Complemental strand, 53271105 - 53270891
Alignment:
Q  200 tccggatttcatattccggaaacatacgatacgggggtg-aac----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctgga 294  Q
    |||||||| ||||||||  ||||||| ||||| |||||| |||    |||||||||||||||| ||||| |||||||| |||||||||||| ||||  ||    
T  53271105 tccggattacatattccataaacatatgatactggggtgtaacaagggaaacttgggactttgtgtatgatgagggttggttcggattttaaaatccaga 53271006  T
Q  295 tttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttc 394  Q
     ||||||| |||| ||||||||||||||||||||||||| |||| |||||||||| ||||||| |  || ||| |||||||||||||||| |||||||||    
T  53271005 attattcaacattggattcttttgtgtgtcccacattgc-ccgacaatttttgtggtccacaatgaccagataactctataaataggggtccctgttttc 53270907  T
Q  395 attacaattaaactac 410  Q
    ||||||| ||||||||    
T  53270906 attacaagtaaactac 53270891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 179 - 335
Target Start/End: Original strand, 40760714 - 40760875
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttc 273  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| | |||||||     ||| ||||||| |||||||||||||| ||||     
T  40760714 taatccggaatacacatatattctagatttcatattccggaaacatacgatactgaggtgaacaaagggaatcttgggaatttgagtatggtgaaggttg 40760813  T
Q  274 gttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcac 335  Q
    |||| |||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||    
T  40760814 gttcagattttagaatccgaatttattcagcattggattcttttgtgtgttccacattgcac 40760875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 210 - 410
Target Start/End: Original strand, 52917797 - 52917993
Alignment:
Q  210 atattccggaaacatacgatacgggggtgaac-----gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagc 304  Q
    ||||||||||||||||||||||  |||| |||     ||||||| |||||||||| |||||||||||| ||||||||||||||||| | |||||||||||    
T  52917797 atattccggaaacatacgatactagggtaaacaaagggaaacttaggactttgagcatggtgagggttggttcggattttagaatccgaatttattcagc 52917896  T
Q  305 atttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattacaatta 404  Q
    ||| ||||||||||||||||| |||||||||||| || ||||||| ||||||||        |||||||||||| ||||| | |||||||||||||| ||    
T  52917897 attggattcttttgtgtgtcctacattgcaccgacaacttttgtggtccacaac--------acctctataaat-ggggtccttgttttcattacaagta 52917987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 53512734 - 53512610
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||||||| ||        |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53512734 tgaggaaatgaaccatatttataggggaggggggttaaaaaaa-cgtggggaagccatcaatgccggtcaaaaaacgtgtagaaacacgtttttcaactt 53512636  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||    
T  53512635 gaccaccgtccaaaacgtttgaaaaa 53512610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 38988789 - 38988912
Alignment:
Q  44 gaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttg 143  Q
    ||||||||||| |||||||||||||||||||||||        |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  38988789 gaggaaatgaaccatatttataggggagggggattaaaaaaa-cgtggggaagccatcaatgctggtcaaaaaacgtgtagaaacacgtttttcaacttg 38988887  T
Q  144 accaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||||||||||||||    
T  38988888 accaccgtccaaaacgtttgaaaaa 38988912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 13752729 - 13752604
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| ||||||||||| |||||||||||        |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  13752729 tgaggaaatgaaccatatttatagcggagggggattaaaaaaaacgtggggaagccatcaattccggtcaaaaaacgtgtagaaacacgttttccaactt 13752630  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||    
T  13752629 gaccaccgtccaaaacgtttgaaaaa 13752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 47984654 - 47984734
Alignment:
Q  88 gtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  47984654 gtggggaagccatcaatgccgatcaaaaaacctatagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 47984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 52917598 - 52917722
Alignment:
Q  43 tgaggaaatgaagcatatttataggggagggggattnnnnnnnncgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaactt 142  Q
    |||||||||||| |||||||||||||||| ||||||        |||| | |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  52917598 tgaggaaatgaaccatatttataggggagtgggattaaaaaaa-cgtgtgaaagccatcaatgtcggtcaaaaaacgtgtagaaacacgtttttcaactt 52917696  T
Q  143 gaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||||||||| |||||||||||    
T  52917697 gaccaccgtccaaagcgtttgaaaaa 52917722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 45657647 - 45657727
Alignment:
Q  88 gtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||| ||| ||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45657647 gtggggaaggcattaaatccggtcaaaaaacgtgtagaaacacgttttttaacttgaccaccgtccaaaacgtttgaaaaa 45657727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 51889458 - 51889382
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac 241  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||    
T  51889458 aaaagtttctagtgtaatccggaatacacatatattctgaatttcatattccggaaacatgcgatactggggtgaac 51889382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 40691129 - 40691204
Alignment:
Q  87 cgtggggaagccatcaatgccggtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgttt 162  Q
    ||||||||||||||||||  | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  40691129 cgtggggaagccatcaatttcagtcaaaaaacatatagaaacacgtttttcaacttgaccaacgtccaaaacgttt 40691204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 179 - 336
Target Start/End: Complemental strand, 4352847 - 4352684
Alignment:
Q  179 taatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatggtgagggtt 272  Q
    ||||| ||||||||||||||||| |||||| ||||| | |||| |||||||   || ||||||      |||| |||||||| || ||| ||||  ||||    
T  4352847 taatctggaatacacatatattcaggattttatatttcagaaaaatacgatcatggcgtgaaccaaagggaaaattgggactgtgtgtacggtgttggtt 4352748  T
Q  273 cgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcacc 336  Q
     ||||||||||||||||| ||||||||||| |||| ||||||||| | ||||||||||||||||    
T  4352747 ggttcggattttagaatccggatttattcaacattggattcttttatatgtcccacattgcacc 4352684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 34952983 - 34953073
Alignment:
Q  309 gattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctataaataggggttcctgttttcattac 399  Q
    ||||||||||| ||  |||||||||||||||||||| |||| |||||||||  || |||| |||||||||| | ||| |||||||||||||    
T  34952983 gattcttttgtatggtccacattgcaccgataatttatgtggtccacaacgtccagatacttctataaataagtgtttctgttttcattac 34953073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 53512579 - 53512539
Alignment:
Q  165 aaaagtttctggtgtaatccggaatacacatatattccgga 205  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53512579 aaaagtttctggtgtaatccggaatacacatatattccgga 53512539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 40760600 - 40760656
Alignment:
Q  112 aaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||| |||| ||||||||||||||| |||||||| | |||||||||||||||||    
T  40760600 aaaaaacgtgtaaaaacacgtttttcaatttgaccactgcccaaaacgtttgaaaaa 40760656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 47984771 - 47984816
Alignment:
Q  184 cggaatacacatatattccggatttcatattccggaaacatacgat 229  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  47984771 cggaatacacatatattccggaatatatattccggaaacatacgat 47984816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 4352964 - 4352905
Alignment:
Q  109 gtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||||||| |||||| || |  |||||||||||||||||| | |||||||||||||||||    
T  4352964 gtcaaaaatcatgtaaaatcgtgtttttcaacttgaccactgcccaaaacgtttgaaaaa 4352905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 4353057 - 4353022
Alignment:
Q  17 gagaaagaagagggtgtgaggaattgtgaggaaatg 52  Q
    |||||||||||||||||||| |||||||||||||||    
T  4353057 gagaaagaagagggtgtgagaaattgtgaggaaatg 4353022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 668
Target Start/End: Original strand, 41864880 - 41864935
Alignment:
Q  613 tctctctcatttcttttgattttgcgattggatctgcgattctttctctccctttt 668  Q
    |||||||||||||||||||||||||   ||||||||| ||||||||| | ||||||    
T  41864880 tctctctcatttcttttgattttgcatctggatctgcaattctttctattcctttt 41864935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 51889531 - 51889488
Alignment:
Q  125 aaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||    
T  51889531 aaacacgtttttcaacttgaccaccgcacaaaatgtttgaaaaa 51889488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 53271225 - 53271167
Alignment:
Q  109 gtcaaaaaacatgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaa 167  Q
    |||||||||  |||| |||  ||||||||||||||||||||| |||||||| |||||||    
T  53271225 gtcaaaaaatgtgtaaaaatgcgtttttcaacttgaccaccgcccaaaacggttgaaaa 53271167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 171 - 410
Target Start/End: Complemental strand, 17359 - 17123
Alignment:
Q  171 ttctggtgtaatccggaatacacatatattccggatttcatattccggaaacatacgatacgggggtgaac------gaaacttgggactttgagtatgg 264  Q
    |||| ||||||||| |||||||||||||||  ||||||  ||||||||||| |||||||   || ||||||      |||||||||||||||| ||||||    
T  17359 ttctcgtgtaatccagaatacacatatattatggattttgtattccggaaaaatacgatcatggcgtgaaccaaagggaaacttgggactttgtgtatgg 17260  T
Q  265 tgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcac 364  Q
    ||| |||| ||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||| | |||||||||| ||         |||    
T  17259 tgatggttggttcggattttagaatccggattcattcaacattggattcttttgtgtgtcccacattgcaccaacaatttttgtggtc---------cac 17169  T
Q  365 atacctctataaataggggttcctgttttcattacaattaaactac 410  Q
    || |||||||||||||||||   |||||||||||||| ||||||||    
T  17168 atgcctctataaataggggtcgatgttttcattacaagtaaactac 17123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 17443 - 17395
Alignment:
Q  120 tgtagaaacacgtttttcaacttgaccaccgtccaaaacgtttgaaaaa 168  Q
    |||| |||| |||||||||||||||||||||  ||||||||||||||||    
T  17443 tgtaaaaacgcgtttttcaacttgaccaccggtcaaaacgtttgaaaaa 17395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 17515 - 17482
Alignment:
Q  17 gagaaagaagagggtgtgaggaattgtgaggaaa 50  Q
    |||||||||||||||||||| |||||||||||||    
T  17515 gagaaagaagagggtgtgagaaattgtgaggaaa 17482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 242 - 359
Target Start/End: Complemental strand, 250863 - 250746
Alignment:
Q  242 gaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataa 341  Q
    ||||||||| |||||  ||| |||||||||| |||||||||||| |||| |||    ||||| ||| |||||||||||||| |||||||| |||||| ||    
T  250863 gaaacttggcactttctgtagggtgagggttggttcggattttataatccggaaaacttcaggattggattcttttgtgtggcccacattacaccgacaa 250764  T
Q  342 tttttgtgatccacaacg 359  Q
    ||| |||| |||||||||    
T  250763 tttatgtggtccacaacg 250746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 426481 - 426585
Alignment:
Q  275 ttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacattgcaccgataatttttgtgatccacaacgctcacatacctctat 374  Q
    |||||||| || |||| | |||| || | |||| ||||||||||| ||  |||||||||||| ||| |||||||| |||||||||  || ||||||||||    
T  426481 ttcggattatataatccgaatttctttatcattggattcttttgtatggtccacattgcaccaatagtttttgtggtccacaacgtccagatacctctat 426580  T
Q  375 aaata 379  Q
    |||||    
T  426581 aaata 426585  T

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