View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8054_low_6 (Length: 320)

Name: NF8054_low_6
Description: NF8054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8054_low_6
NF8054_low_6
[»] chr2 (3 HSPs)
chr2 (60-153)||(4266315-4266408)
chr2 (73-104)||(4266259-4266290)
chr2 (101-141)||(44694707-44694747)
[»] chr4 (1 HSPs)
chr4 (108-141)||(50668366-50668399)
[»] chr7 (1 HSPs)
chr7 (108-140)||(42313467-42313499)
[»] chr6 (1 HSPs)
chr6 (112-152)||(12459732-12459772)
[»] chr3 (2 HSPs)
chr3 (108-140)||(17755147-17755179)
chr3 (108-140)||(19056467-19056499)
[»] chr1 (1 HSPs)
chr1 (108-140)||(51067897-51067929)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 4266315 - 4266408
Alignment:
Q  60 ctcacctttagccgttgttttgaaattaatatgagaacaagtatagaaaatacataatatatgtaaggctcggggttcaaacgtcaaccaccat 153  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||||| || |||||||    
T  4266315 ctcatctttagtagttgttttgaaattaatatgagaacaagtatagacaatatataatatatgtaaggctcggagtttaaacgccagccaccat 4266408  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 4266259 - 4266290
Alignment:
Q  73 gttgttttgaaattaatatgagaacaagtata 104  Q
    ||||||||||||||||||||||||||||||||    
T  4266259 gttgttttgaaattaatatgagaacaagtata 4266290  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 44694707 - 44694747
Alignment:
Q  101 tatagaaaatacataatatatgtaaggctcggggttcaaac 141  Q
    |||||| ||| ||||||||||| ||||||||||||||||||    
T  44694707 tatagacaatgcataatatatgcaaggctcggggttcaaac 44694747  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 50668366 - 50668399
Alignment:
Q  108 aatacataatatatgtaaggctcggggttcaaac 141  Q
    |||||||||||||||||||| |||||||||||||    
T  50668366 aatacataatatatgtaaggttcggggttcaaac 50668399  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 42313467 - 42313499
Alignment:
Q  108 aatacataatatatgtaaggctcggggttcaaa 140  Q
    |||||||||||||||||||||| ||||||||||    
T  42313467 aatacataatatatgtaaggcttggggttcaaa 42313499  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 12459772 - 12459732
Alignment:
Q  112 cataatatatgtaaggctcggggttcaaacgtcaaccacca 152  Q
    |||||||||||||||| ||||||||||||| ||| ||||||    
T  12459772 cataatatatgtaaggttcggggttcaaacttcagccacca 12459732  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 17755147 - 17755179
Alignment:
Q  108 aatacataatatatgtaaggctcggggttcaaa 140  Q
    |||||||||||||||||||| ||||||||||||    
T  17755147 aatacataatatatgtaaggttcggggttcaaa 17755179  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 19056467 - 19056499
Alignment:
Q  108 aatacataatatatgtaaggctcggggttcaaa 140  Q
    |||||||||||||||||||| ||||||||||||    
T  19056467 aatacataatatatgtaaggttcggggttcaaa 19056499  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 51067929 - 51067897
Alignment:
Q  108 aatacataatatatgtaaggctcggggttcaaa 140  Q
    ||||||||||||||| |||||||||||||||||    
T  51067929 aatacataatatatgcaaggctcggggttcaaa 51067897  T

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