View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8055_high_2 (Length: 525)
Name: NF8055_high_2
Description: NF8055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8055_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 16795115 - 16794617
Alignment:
| Q |
18 |
caatgagaacacttggtaactctgttgtttcattagcatggagaggtccaaatggaacaccagctgatgtttgtcactgggctgatggattccctttaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16795115 |
caatgagaacacttggtaactctgttgtttcattagcatggagaggtccaaatggaacaccagctgatgtttgtcactgggctgatggattccctttaaa |
16795016 |
T |
|
| Q |
118 |
tattcatttctataattcacttcttcaagccatttttgatattcgagaagagacattagtccttgatgaagtcgatgaattactcgagttgattaagaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16795015 |
tattcatttctataattcacttcttcaagccatttttgatattcgagaagagacattagtccttgatgaagtcgatgaattactcgagttgattaagaag |
16794916 |
T |
|
| Q |
218 |
acttggtctatattaggtataactaggtcaattcacaatgtgtgtttcgcttgggttttgtttcaacaatatgtagcaaccggtcaagttgattgtgatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16794915 |
acttggtctatattaggtataactaggtcaattcacaatgtgtgtttcgcttgggttttgtttcaacaatatgtagcaaccggtcaagttgattgtgatc |
16794816 |
T |
|
| Q |
318 |
ttctttgtgcttcacatgttatgttgggtgaggttgctaatgatgctaagaaagaaaaagattctttttatcttaagttgttgacatcaattttgagttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16794815 |
ttctttgtgcttcacatgttatgttgggtgaggttgctaatgatgctaagaaagaaaaagattctttttatcttaagttgttgacatcaattttgagttc |
16794716 |
T |
|
| Q |
418 |
aatgcaaagttggggtgagaaaaggttgcttaattatcatgagttttattctagagggactatttctcaaatcgaaaatcttcttcctttgatgatgtc |
516 |
Q |
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| T |
16794715 |
aatgcaaagttggggtgagaaaaggttgcttaattatcatgagttttattctagagggactatttctcaaatcgaaaatcttcttcctttgatgttgtc |
16794617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 32733243 - 32733684
Alignment:
| Q |
18 |
caatgagaacacttggtaactctgttgtttcattagcatggagaggtccaaatggaacaccagctgatgtttgtcactgggctgatggattccctttaaa |
117 |
Q |
| |
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|||||||||| ||| |||||||||| ||||| |||||||||||| || ||||| || ||| ||||||||||||| |||| |||||||||||||| || |
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| T |
32733243 |
caatgagaaccctttgtaactctgtggtttccttagcatggagaagtaacaatggtactccaactgatgtttgtcattgggtagatggattccctttcaa |
32733342 |
T |
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| Q |
118 |
tattcatttctataattcacttcttcaagccatttttgatattcgagaagagacattagtccttgatgaagtcgatgaattactcgagttgattaagaag |
217 |
Q |
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| T |
32733343 |
tcttcatctatacacttctcttcttcaagcgatttttgatatacgggacgaaacattagtccttgatgaagttgatgagctttttgaactcatgaagaaa |
32733442 |
T |
|
| Q |
218 |
acttggtctatattaggtataactaggtcaattcacaatgtgtgtttcgcttgggttttgtttcaacaatatgtagcaaccggtcaagttgattgtgatc |
317 |
Q |
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| T |
32733443 |
acatggtcaacatttgggatcacattgccaattcacaatatttgcttcacttgggttctgtttcatcagtatatagctactggacagattgaacctgatc |
32733542 |
T |
|
| Q |
318 |
ttctttgtgcttcacatgttatgttgggtgaggttgctaatgatgctaagaaagaaaaagattctttttatcttaagttgttgacatcaattttgagttc |
417 |
Q |
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|||||| |||||| ||||||||||| ||||||||| ||||||||||||| || || || ||||| ||| ||||| | | | || |||||| ||| |
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| T |
32733543 |
ttctttcggcttcatatgttatgttgactgaggttgcaaatgatgctaagagggagaaggaatctttgtatgttaagattctttcttcggttttgatttc |
32733642 |
T |
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| Q |
418 |
aatgcaaagttggggtgagaaaaggttgcttaattatcatga |
459 |
Q |
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| T |
32733643 |
aatgcagagttgggctgagaagaggttgctcaattatcatga |
32733684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 296
Target Start/End: Complemental strand, 14878559 - 14878347
Alignment:
| Q |
84 |
atgtttgtcactgggctgatggattccctttaaatattcatttctataattcacttcttcaagccatttttgatattcgagaagagacattagtccttga |
183 |
Q |
| |
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||||||| || |||||| ||||||| ||| | |||||||| |||| | ||| ||||||||| ||||||| ||| || || || |||| ||||||||| |
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| T |
14878559 |
atgtttgccattgggctaatggatttcctgtcaatattcacctctacatttcccttcttcaatccattttcgatcttgatgatgaaacatcagtccttga |
14878460 |
T |
|
| Q |
184 |
tgaagtcgatgaattactcgagttgattaagaagacttggtctatattaggtataactaggtcaattcacaatgtgtgtttcgcttgggttttgtttcaa |
283 |
Q |
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||| |||| || || || ||| | || ||||| |||||||| | |||| || | |||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
14878459 |
cgaaatcgacgagttgcttgagctcatgaagaaaacttggtcgacgctagggatcaataggccaattcacaatttgtgtttcacttggattctgtttcaa |
14878360 |
T |
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| Q |
284 |
caatatgtagcaa |
296 |
Q |
| |
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||||||||||||| |
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| T |
14878359 |
caatatgtagcaa |
14878347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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