View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8055_high_3 (Length: 515)

Name: NF8055_high_3
Description: NF8055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8055_high_3
NF8055_high_3
[»] chr7 (18 HSPs)
chr7 (52-499)||(46096664-46097116)
chr7 (1-54)||(4974750-4974803)
chr7 (1-52)||(48880942-48880993)
chr7 (1-51)||(15329273-15329323)
chr7 (1-51)||(15577865-15577915)
chr7 (1-51)||(42611811-42611861)
chr7 (1-51)||(45637712-45637762)
chr7 (1-54)||(20010112-20010165)
chr7 (1-54)||(24394969-24395022)
chr7 (1-52)||(3961978-3962029)
chr7 (1-53)||(34482833-34482885)
chr7 (1-51)||(35444558-35444608)
chr7 (1-51)||(25167865-25167915)
chr7 (1-51)||(37477095-37477145)
chr7 (1-54)||(15238379-15238432)
chr7 (1-48)||(36790481-36790528)
chr7 (1-51)||(18036978-18037028)
chr7 (1-47)||(29737143-29737189)
[»] chr3 (31 HSPs)
chr3 (1-54)||(6041881-6041934)
chr3 (1-54)||(37217068-37217121)
chr3 (1-54)||(48160902-48160955)
chr3 (1-53)||(3456062-3456114)
chr3 (281-413)||(45153520-45153651)
chr3 (1-51)||(2754717-2754767)
chr3 (1-51)||(3137429-3137479)
chr3 (1-51)||(3574542-3574592)
chr3 (1-51)||(11347268-11347318)
chr3 (1-51)||(34482925-34482975)
chr3 (1-51)||(42297353-42297403)
chr3 (3-60)||(33113785-33113841)
chr3 (1-53)||(30385009-30385061)
chr3 (1-51)||(8320599-8320649)
chr3 (1-51)||(19650915-19650965)
chr3 (1-51)||(37522053-37522103)
chr3 (1-50)||(9797044-9797093)
chr3 (7-51)||(24343547-24343591)
chr3 (1-52)||(33145712-33145762)
chr3 (1-40)||(42921154-42921193)
chr3 (1-51)||(22426359-22426409)
chr3 (1-51)||(36865042-36865092)
chr3 (14-48)||(40327878-40327912)
chr3 (1-51)||(41224233-41224283)
chr3 (3-58)||(33839524-33839579)
chr3 (20-51)||(47402630-47402661)
chr3 (1-47)||(40328052-40328098)
chr3 (1-39)||(47738117-47738155)
chr3 (1-42)||(33839756-33839797)
chr3 (1-53)||(8362060-8362112)
chr3 (154-190)||(16295151-16295187)
[»] chr4 (27 HSPs)
chr4 (1-53)||(2624835-2624887)
chr4 (1-53)||(22199259-22199311)
chr4 (1-53)||(49387903-49387955)
chr4 (1-51)||(10442804-10442854)
chr4 (1-51)||(31078834-31078884)
chr4 (1-51)||(36072947-36072997)
chr4 (1-51)||(4751446-4751496)
chr4 (1-51)||(21802337-21802387)
chr4 (1-51)||(24128239-24128289)
chr4 (1-51)||(33530703-33530753)
chr4 (1-51)||(47290066-47290116)
chr4 (1-50)||(7745127-7745176)
chr4 (1-53)||(46441842-46441894)
chr4 (1-51)||(24392667-24392717)
chr4 (1-47)||(36073354-36073400)
chr4 (1-51)||(44893426-44893476)
chr4 (1-51)||(53123030-53123081)
chr4 (1-51)||(23964480-23964530)
chr4 (1-51)||(37934956-37935006)
chr4 (1-51)||(50156593-50156643)
chr4 (290-353)||(3167136-3167199)
chr4 (366-414)||(42563402-42563450)
chr4 (1-51)||(44893228-44893279)
chr4 (1-47)||(25063373-25063419)
chr4 (362-399)||(24858655-24858692)
chr4 (362-414)||(41899091-41899143)
chr4 (1-45)||(42671675-42671719)
[»] chr2 (17 HSPs)
chr2 (1-53)||(21936079-21936131)
chr2 (1-51)||(7475523-7475573)
chr2 (1-51)||(9293591-9293641)
chr2 (1-51)||(13354846-13354896)
chr2 (1-51)||(23268077-23268127)
chr2 (1-51)||(35160757-35160807)
chr2 (1-50)||(10661888-10661937)
chr2 (1-51)||(33380207-33380257)
chr2 (319-399)||(19002752-19002832)
chr2 (1-48)||(31174849-31174896)
chr2 (1-51)||(14941381-14941431)
chr2 (1-51)||(43330912-43330962)
chr2 (1-49)||(21393703-21393751)
chr2 (1-51)||(9723405-9723455)
chr2 (1-47)||(22592933-22592979)
chr2 (1-51)||(27847632-27847682)
chr2 (14-48)||(40262714-40262748)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-52)||(11620-11671)
[»] chr1 (22 HSPs)
chr1 (1-52)||(40214987-40215038)
chr1 (1-54)||(9910308-9910361)
chr1 (1-53)||(36966723-36966775)
chr1 (1-52)||(37821849-37821900)
chr1 (1-47)||(16045813-16045859)
chr1 (1-51)||(18404442-18404492)
chr1 (1-51)||(19015404-19015454)
chr1 (1-51)||(44094698-44094748)
chr1 (1-62)||(6883476-6883537)
chr1 (1-53)||(32000282-32000334)
chr1 (1-51)||(25463676-25463726)
chr1 (1-51)||(25973414-25973464)
chr1 (283-399)||(36995200-36995317)
chr1 (319-414)||(2748570-2748665)
chr1 (1-48)||(3559620-3559667)
chr1 (1-51)||(40273702-40273752)
chr1 (1-51)||(41876457-41876507)
chr1 (14-51)||(34519758-34519795)
chr1 (14-51)||(51620980-51621017)
chr1 (14-52)||(52329318-52329356)
chr1 (362-414)||(25129894-25129946)
chr1 (3-47)||(27523054-27523098)
[»] chr8 (32 HSPs)
chr8 (1-51)||(15187560-15187610)
chr8 (1-51)||(32064745-32064795)
chr8 (1-51)||(34665382-34665432)
chr8 (2-51)||(24211569-24211618)
chr8 (1-54)||(32393855-32393908)
chr8 (1-51)||(17841865-17841915)
chr8 (1-51)||(20091816-20091866)
chr8 (1-51)||(26042131-26042181)
chr8 (1-51)||(40780144-40780194)
chr8 (1-51)||(42755057-42755107)
chr8 (1-53)||(8453832-8453884)
chr8 (1-53)||(35353039-35353091)
chr8 (4-51)||(1645983-1646030)
chr8 (1-43)||(38016979-38017021)
chr8 (1-50)||(14128865-14128914)
chr8 (1-60)||(31347797-31347856)
chr8 (1-47)||(37986070-37986116)
chr8 (1-51)||(39772816-39772866)
chr8 (1-52)||(27835468-27835519)
chr8 (1-52)||(37132673-37132724)
chr8 (1-51)||(6108248-6108298)
chr8 (1-51)||(7017880-7017930)
chr8 (1-51)||(41819793-41819843)
chr8 (1-46)||(25581254-25581299)
chr8 (1-50)||(27782132-27782181)
chr8 (7-52)||(30055542-30055587)
chr8 (1-41)||(7021988-7022028)
chr8 (1-47)||(3890413-3890459)
chr8 (1-47)||(24844873-24844919)
chr8 (1-51)||(30835062-30835111)
chr8 (281-346)||(37953216-37953281)
chr8 (25-53)||(15972901-15972929)
[»] chr6 (19 HSPs)
chr6 (1-51)||(28675148-28675198)
chr6 (1-51)||(33695342-33695392)
chr6 (1-51)||(33696696-33696746)
chr6 (1-53)||(17176036-17176088)
chr6 (1-61)||(17705480-17705540)
chr6 (1-51)||(6127275-6127325)
chr6 (1-51)||(18365588-18365638)
chr6 (1-51)||(18370852-18370902)
chr6 (1-51)||(23291099-23291149)
chr6 (1-51)||(25986930-25986980)
chr6 (1-51)||(18889712-18889761)
chr6 (1-51)||(6031756-6031806)
chr6 (314-400)||(30456792-30456878)
chr6 (16-48)||(8515755-8515787)
chr6 (1-45)||(11548603-11548647)
chr6 (1-40)||(32702216-32702255)
chr6 (362-408)||(29481912-29481958)
chr6 (18-51)||(2309455-2309488)
chr6 (362-414)||(8082503-8082555)
[»] chr5 (22 HSPs)
chr5 (1-51)||(6043526-6043576)
chr5 (1-53)||(11361146-11361198)
chr5 (1-56)||(22913069-22913124)
chr5 (1-51)||(2477636-2477686)
chr5 (1-51)||(3362778-3362828)
chr5 (1-51)||(38899741-38899791)
chr5 (1-53)||(4434022-4434074)
chr5 (1-57)||(12850795-12850851)
chr5 (3-51)||(14138668-14138716)
chr5 (1-53)||(33584344-33584396)
chr5 (1-56)||(3522021-3522076)
chr5 (1-51)||(4892202-4892252)
chr5 (1-47)||(8145379-8145425)
chr5 (1-51)||(25398238-25398288)
chr5 (1-51)||(37321808-37321859)
chr5 (1-51)||(12614748-12614798)
chr5 (1-54)||(17545700-17545753)
chr5 (1-47)||(27481830-27481876)
chr5 (1-39)||(10458409-10458447)
chr5 (320-414)||(15965811-15965905)
chr5 (14-51)||(13664642-13664679)
chr5 (366-414)||(37706545-37706593)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-51)||(12842-12892)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-51)||(41011-41061)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-51)||(47850-47900)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-56)||(4391-4446)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-50)||(3069-3118)
[»] scaffold0228 (3 HSPs)
scaffold0228 (1-40)||(8413-8452)
scaffold0228 (1-40)||(15995-16034)
scaffold0228 (1-40)||(25947-25986)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 52 - 499
Target Start/End: Complemental strand, 46097116 - 46096664
Alignment:
Q  52 attaaaaaactctaacagcttcttctttttgtgtgtggacggttatcctttgcgtgcagtgcatagaataattactcaagttggtacgaccgcagtaact 151  Q
    |||||||||||||||||   |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  46097116 attaaaaaactctaaca---tcttttttttg-gtgtggacggttatcctttgcgtgcagtgcatagaataattactcaagttggtaggaccgcaataact 46097021  T
Q  152 cgcaaaa-ctctcgttcaaaagatttaatattgttgcattttt----------tcaaactcaaacatctaattaaactataagagatctcttataaagaa 240  Q
    ||||||| |||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||||||||||||||||||||    
T  46097020 cgcaaaaactctcgttcaaaagatttaatattgttgcatttttagtattgaattcaaactccaacatctaattaaactataagagatctcttataaagaa 46096921  T
Q  241 gaagttcaagtaacctaatggtaaagtttgaaaatatccggagtcttgctaacaagtgtctttaggacgcatattaaagatacaaaaatggaaataattg 340  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  46096920 gaagttcaagtaacctaatggtaaagtttgaaaatatcttgagtcttgctaacaagtgtctttagggcgcatgttaaagatacaaaaatgaaaataattg 46096821  T
Q  341 ataaatcttaagtnnnnnnnnttactttttaaaatttcaatgcactgaatgcaccatttttaagataatatttcacatgtgccccaaaatcacttgttaa 440  Q
    |||||| |||| |        |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  46096820 ataaattttaaataaaaaaaattactttttaaaatttcaatgcactgaatgcaccatttctaagataatatttcacatgtgccccaaaattacttgttaa 46096721  T
Q  441 catttcccaaatatcttttatcatctcattcggtattcttgggttatagttgttgtgat 499  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  46096720 catttctcaaatatcttttatcatctcattcggtattcttgggt--tagttgttgtgat 46096664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4974750 - 4974803
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4974750 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 4974803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48880942 - 48880993
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48880942 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 48880993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15329323 - 15329273
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15329323 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15329273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15577865 - 15577915
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577865 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42611861 - 42611811
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42611861 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45637762 - 45637712
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45637762 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 45637712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20010112 - 20010165
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20010112 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctcatt 20010165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24395022 - 24394969
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24395022 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcatt 24394969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3962029 - 3961978
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3962029 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctca 3961978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34482885 - 34482833
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  34482885 tcattcttaaaattttcttaataaaatctttcttgatatatagcattgctcat 34482833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35444608 - 35444558
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  35444608 tcattcttgaaattttcttgaaaaaatctttcttaatatatagcattgctc 35444558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25167865 - 25167915
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||    
T  25167865 tcattcttaaaattttcttaaaaaaatctttcttgatatatagcattgctc 25167915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37477095 - 37477145
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  37477095 tcattcttaaatttttcttgagaaaatctttcttgatatatagcattgctc 37477145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15238432 - 15238379
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    ||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||    
T  15238432 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctcatt 15238379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36790481 - 36790528
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattg 48  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||    
T  36790481 tcattcttaaatttttcttgataaaaactttcttgatatatagcattg 36790528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18037028 - 18036978
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| || ||||||||| |||||||||||||||||||| ||||||||    
T  18037028 tcattcttaaatttttcttgaaaaaatctttcttgatatatatcattgctc 18036978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29737189 - 29737143
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||    
T  29737189 tcattcttaaaattttcttaaaaaaatctttcttgatatatagcatt 29737143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6041934 - 6041881
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6041934 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 6041881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37217068 - 37217121
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37217068 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcatt 37217121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48160955 - 48160902
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48160955 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcatt 48160902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3456114 - 3456062
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3456114 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 3456062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 45153651 - 45153520
Alignment:
Q  281 gagtcttgctaacaagtgtctttaggacgcatattaaagatacaaaaatggaaataattgataaatcttaagtnnnnnnnnttactttttaaaatttcaa 380  Q
    |||||||||||||||||| | ||||| | | | |||| ||||||||| |||||||||||||||||| ||||||        ||||||| |||| ||||||    
T  45153651 gagtcttgctaacaagtgcccttagg-cactttttaaggatacaaaagtggaaataattgataaattttaagtagaaaaagttactttataaagtttcaa 45153553  T
Q  381 tgcactgaatgcaccatttttaagataatattt 413  Q
    |||| ||||||||||||||| ||||||| ||||    
T  45153552 tgcattgaatgcaccattttcaagataaaattt 45153520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2754767 - 2754717
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2754767 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 2754717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3137429 - 3137479
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3137429 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 3137479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3574542 - 3574592
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3574542 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3574592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11347318 - 11347268
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11347318 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 11347268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34482925 - 34482975
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34482925 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 34482975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42297403 - 42297353
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42297403 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 42297353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 33113841 - 33113785
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaaaaaa 60  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  33113841 attcttgaaattttcttaataaaatctttcttgatatatagcattgctc-ttaaaaaa 33113785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30385061 - 30385009
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  30385061 tcatttttgaaattttcttgataaaatctttcttgataaatagcattgctcat 30385009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8320599 - 8320649
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  8320599 tcattcttaaaattttcttgataaaatctttcttgatatataacattgctc 8320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19650915 - 19650965
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  19650915 tcattcttaaaattttcttgataaaatctttcttaatatataacattgctc 19650965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37522103 - 37522053
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  37522103 tcattcttaaaattttcttgaaaaaatctttcttgatatatagtattgctc 37522053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9797044 - 9797093
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  9797044 tcattcttgaatttttcttgagaaaatctttcttgatatataacattgct 9797093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 24343591 - 24343547
Alignment:
Q  7 ttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  24343591 ttgaatttttcttgataaaatctttcttaatatatagcattgctc 24343547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33145762 - 33145712
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  33145762 tcattcttaaaatttt-ttaataaaatctttcttgatatatagcattgctca 33145712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42921193 - 42921154
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  42921193 tcattcttaaaattttcttgataaaatctttcttgatata 42921154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22426359 - 22426409
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||| || ||||||||||||||||||||||||| ||||||| ||||||||    
T  22426359 tcatttttaaaattttcttgataaaatctttcttaatatataacattgctc 22426409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36865042 - 36865092
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| |||||||||| ||| ||||||||||||||||    
T  36865042 tcattcttaaaattttcttaataaaatcttccttaatatatagcattgctc 36865092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 40327912 - 40327878
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattg 48  Q
    |||||||||||||||||||||||||||||||||||    
T  40327912 tttcttgataaaatctttcttgatatatagcattg 40327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41224283 - 41224233
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  41224283 tcattcttgaatttttcttgagaaaatctttcttaatatatagcagtgctc 41224233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 33839579 - 33839524
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaaaa 58  Q
    |||||| || |||| ||||||||||||||||| ||||||| |||||||| ||||||    
T  33839579 attcttaaattttttttgataaaatctttcttaatatataacattgctctttaaaa 33839524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 47402630 - 47402661
Alignment:
Q  20 gataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||||||||    
T  47402630 gataaaatctttcttgatatatagcattgctc 47402661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40328052 - 40328098
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  40328052 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 40328098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47738155 - 47738117
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatat 39  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  47738155 tcattcttgaatatttcttgataaaatctttcttgatat 47738117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33839756 - 33839797
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatata 42  Q
    |||||||||||  ||||||||||||||| |||||||||||||    
T  33839756 tcattcttgaatctttcttgataaaatcattcttgatatata 33839797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8362060 - 8362112
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||| ||||||||| |   | |||||||||||||||||||||||||    
T  8362060 tcattcttgaatttttcttgaaattttttttcttgatatatagcattgctcat 8362112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 16295187 - 16295151
Alignment:
Q  154 caaaactctcgttcaaaagatttaatattgttgcatt 190  Q
    |||||||||  ||||||||||||||||||||||||||    
T  16295187 caaaactcttcttcaaaagatttaatattgttgcatt 16295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2624887 - 2624835
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2624887 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 2624835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22199311 - 22199259
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22199311 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 22199259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49387903 - 49387955
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49387903 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 49387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10442804 - 10442854
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10442804 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 10442854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31078834 - 31078884
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078834 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 31078884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36072997 - 36072947
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36072997 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4751496 - 4751446
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4751496 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctc 4751446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21802337 - 21802387
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21802337 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 21802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24128289 - 24128239
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24128289 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 24128239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33530703 - 33530753
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33530703 tcattcttgaatttttcttgataaaatctttcttgatatatagcattgctc 33530753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47290116 - 47290066
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47290116 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 47290066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7745127 - 7745176
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7745127 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 7745176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46441894 - 46441842
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  46441894 tcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcat 46441842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24392717 - 24392667
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  24392717 tcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctc 24392667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36073400 - 36073354
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  36073400 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 36073354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44893476 - 44893426
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  44893476 tcattcttgaaatttttttgaaaaaatctttcttgatatatagcattgctc 44893426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 53123081 - 53123030
Alignment:
Q  1 tcattcttgaaattttctt-gataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  53123081 tcattcttgaaattttctttgaaaaaatctttcttgatatatagcattgctc 53123030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23964480 - 23964530
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  23964480 tcattcttaaaatttttttgataaaatctttcttgatatataacattgctc 23964530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37934956 - 37935006
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  37934956 tcattcttgacatttttttgataaaatcttttttgatatatagcattgctc 37935006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50156593 - 50156643
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  50156593 tcattcttaaaattttcttgaaaaaatctttcttaatatatagcattgctc 50156643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 3167136 - 3167199
Alignment:
Q  290 taacaagtgtctttaggacgcatattaaagatacaaaaatggaaataattgataaatcttaagt 353  Q
    ||||||||||||||||||| | | |||| |||||||||||| ||||||||| ||||| ||||||    
T  3167136 taacaagtgtctttaggacacttgttaaggatacaaaaatgaaaataattggtaaattttaagt 3167199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 42563402 - 42563450
Alignment:
Q  366 tttttaaaatttcaatgcactgaatgcaccatttttaagataatatttc 414  Q
    |||||||| |||||||||| |||||||||||||| |||||||| |||||    
T  42563402 tttttaaagtttcaatgcattgaatgcaccatttctaagataaaatttc 42563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44893228 - 44893279
Alignment:
Q  1 tcattcttgaaattttctt-gataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| || || |||||||||||| ||||||||||||||||    
T  44893228 tcattcttgaaattttttttgaaaaaatctttcttaatatatagcattgctc 44893279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25063419 - 25063373
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  25063419 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 25063373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 24858692 - 24858655
Alignment:
Q  362 ttactttttaaaatttcaatgcactgaatgcaccattt 399  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  24858692 ttactttttaaaatttcaatgcattgaatgcatcattt 24858655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 41899143 - 41899091
Alignment:
Q  362 ttactttttaaaatttcaatgcactgaatgcaccatttttaagataatatttc 414  Q
    |||| ||||||| |||||||||| ||||||||||||||  |||| ||||||||    
T  41899143 ttacattttaaagtttcaatgcattgaatgcaccatttccaagacaatatttc 41899091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42671719 - 42671675
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagca 45  Q
    |||||||| || |||| |||||||||||||| |||||||||||||    
T  42671719 tcattcttaaattttttttgataaaatctttattgatatatagca 42671675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21936131 - 21936079
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936131 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 21936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7475523 - 7475573
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7475523 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 7475573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9293591 - 9293641
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9293591 tcattcttgaaaatttcttgataaaatctttcttgatatatagcattgctc 9293641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13354896 - 13354846
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13354896 tcattcttgaaattttcttgataaaatctttcttgatatataacattgctc 13354846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23268077 - 23268127
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23268077 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 23268127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35160807 - 35160757
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35160807 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 35160757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10661937 - 10661888
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10661937 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 10661888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33380257 - 33380207
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  33380257 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33380207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 19002752 - 19002832
Alignment:
Q  319 gatacaaaaatggaaataattgataaatcttaagtnnnnnnnnttactttttaaaatttcaatgcactgaatgcaccattt 399  Q
    ||||| |||||| ||||||||||||||| ||||||        ||||||||||||||||||||||| ||||||||||||||    
T  19002752 gatactaaaatgaaaataattgataaattttaagtagaaaaatttactttttaaaatttcaatgcattgaatgcaccattt 19002832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31174849 - 31174896
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattg 48  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  31174849 tcattcttgaaattttcttaataaaatctttcttgatatataacattg 31174896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14941381 - 14941431
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  14941381 tcattcttgaatctttcttaataaaatctttcttgatatatagcattgctc 14941431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43330962 - 43330912
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  43330962 tcattcttgaattttttttgagaaaatctttcttgatatatagcattgctc 43330912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21393703 - 21393751
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgc 49  Q
    |||||||| || ||||||||| ||||| |||||||||||||||||||||    
T  21393703 tcattcttaaatttttcttgagaaaatttttcttgatatatagcattgc 21393751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9723455 - 9723405
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||  |||||| |||||||||||||| ||||||||||||||||    
T  9723455 tcattcttaaatctttcttaataaaatctttcttaatatatagcattgctc 9723405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22592933 - 22592979
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  22592933 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 22592979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27847682 - 27847632
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||  |||||| |||||||||||||| ||||| ||||||||||    
T  27847682 tcattcttgaatctttcttaataaaatctttctttatatacagcattgctc 27847632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 40262714 - 40262748
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattg 48  Q
    ||||||||||||||||||||||||||||| |||||    
T  40262714 tttcttgataaaatctttcttgatatataacattg 40262748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11671 - 11620
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11671 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 11620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40215038 - 40214987
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40215038 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 40214987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9910308 - 9910361
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9910308 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcatt 9910361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36966723 - 36966775
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36966723 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 36966775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37821849 - 37821900
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37821849 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 37821900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16045813 - 16045859
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16045813 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 16045859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18404492 - 18404442
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18404492 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 18404442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19015454 - 19015404
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19015454 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 19015404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44094748 - 44094698
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44094748 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 44094698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6883537 - 6883476
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaaaaaact 62  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||    
T  6883537 tcattcttgaaattttcttaaaaaaatctttcttaatatatagcattgctcataaaaaaact 6883476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32000282 - 32000334
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  32000282 tcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctcat 32000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25463726 - 25463676
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  25463726 tcattcttaaaattttcttcataaaatctttcttgatatatagcattgctc 25463676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25973464 - 25973414
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  25973464 tcattcttgaaattttcatgataaaatctttcttgatatataacattgctc 25973414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 399
Target Start/End: Original strand, 36995200 - 36995317
Alignment:
Q  283 gtcttgctaacaagtgtctttaggacgcatattaaagatacaaaaatggaaataattgataaa-tcttaagtnnnnnnnnttactttttaaaatttcaat 381  Q
    |||||||||||||||| | ||||| | | | |||| |||||||||||||||||||||| |||| | ||||||        ||||||| ||||||||||||    
T  36995200 gtcttgctaacaagtgcccttagggcacttgttaaggatacaaaaatggaaataattggtaaatttttaagtagaaaaagttactttataaaatttcaat 36995299  T
Q  382 gcactgaatgcaccattt 399  Q
    ||| ||||||||||||||    
T  36995300 gcattgaatgcaccattt 36995317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 414
Target Start/End: Complemental strand, 2748665 - 2748570
Alignment:
Q  319 gatacaaaaatggaaataattgataaatcttaagtnnnnnnnnttactttttaaaatttcaatgcactgaatgcaccatttttaagataatatttc 414  Q
    ||||||||||| |||||||||||||||| ||||||        |||||||| ||| |||||||||| ||||| |||||||||||||| || |||||    
T  2748665 gatacaaaaatagaaataattgataaattttaagtaaaaaaaattacttttcaaagtttcaatgcattgaattcaccatttttaagacaaaatttc 2748570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3559667 - 3559620
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattg 48  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  3559667 tcattcttaaaatttttttgataaaatctttcttgatatatagcattg 3559620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40273752 - 40273702
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  40273752 tcattcttgaatttttcttgaaaaaatctttcttgatatctagcattgctc 40273702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41876457 - 41876507
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  41876457 tcattcttaaaatttttttgaaaaaatctttcttgatatatagcattgctc 41876507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 34519795 - 34519758
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||| |||||||||||||||||||||||||||||||    
T  34519795 tttcttaataaaatctttcttgatatatagcattgctc 34519758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 51621017 - 51620980
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||| |||||||||||||||||||||||||||||||    
T  51621017 tttcttaataaaatctttcttgatatatagcattgctc 51620980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 52329356 - 52329318
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctca 52  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  52329356 tttcttgataaattctttcttgatatataacattgctca 52329318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 25129894 - 25129946
Alignment:
Q  362 ttactttttaaaatttcaatgcactgaatgcaccatttttaagataatatttc 414  Q
    |||| ||||||| |||||||||| ||||||||||||||  ||||||| |||||    
T  25129894 ttacattttaaagtttcaatgcattgaatgcaccatttccaagataacatttc 25129946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 27523098 - 27523054
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||  ||||||||||||||| ||||||||||||| ||||    
T  27523098 attcttgaatctttcttgataaaatcattcttgatatataacatt 27523054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15187610 - 15187560
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15187610 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15187560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32064795 - 32064745
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32064795 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 32064745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34665432 - 34665382
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665432 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24211569 - 24211618
Alignment:
Q  2 cattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24211569 cattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32393908 - 32393855
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32393908 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcatt 32393855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17841865 - 17841915
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17841865 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 17841915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20091816 - 20091866
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20091816 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 20091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26042131 - 26042181
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26042131 tcattcttgaaattttcttgataaaatctttcttaatatatagcattgctc 26042181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40780144 - 40780194
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40780144 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 40780194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42755057 - 42755107
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42755057 tcattcttgaaattttcttgataaaatctttcttgatatatatcattgctc 42755107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8453884 - 8453832
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  8453884 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgttcat 8453832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35353091 - 35353039
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  35353091 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcat 35353039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 1645983 - 1646030
Alignment:
Q  4 ttcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1645983 ttcttaaaattttcttgataaaatctttcttgatatatagcattgctc 1646030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38017021 - 38016979
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatag 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38017021 tcattcttgaaattttcttgataaaatctttcttgatatatag 38016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14128914 - 14128865
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  14128914 tcattcttaaaattttattgataaaatctttcttgatatatagcattgct 14128865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31347797 - 31347856
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaaaaaa 60  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||| || |||||    
T  31347797 tcattcttgaatttttcttgagaaaatatttcttgatatatagcattgctcttttaaaaa 31347856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37986070 - 37986116
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  37986070 tcattcttaaaatttttttgataaaatctttcttgatatatagcatt 37986116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39772816 - 39772866
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  39772816 tcattcttgaaatttttttgataaaatatttcttgatatataacattgctc 39772866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27835468 - 27835519
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||| ||||||| |||| |||||| ||||||||||||||||||||    
T  27835468 tcattcttgaatttttcttaataagatctttattgatatatagcattgctca 27835519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37132673 - 37132724
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    |||||||| || ||||||||||||||| ||| ||||||||||||||||||||    
T  37132673 tcattcttaaatttttcttgataaaatattttttgatatatagcattgctca 37132724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6108248 - 6108298
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| | |||||||||||||||||||| ||||||||    
T  6108248 tcattcttaaaattttcttaaaaaaatctttcttgatatataacattgctc 6108298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7017880 - 7017930
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||| | |||||||||| ||||||||||||||||||    
T  7017880 tcattcttgaatttttcttaagaaaatctttcatgatatatagcattgctc 7017930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41819793 - 41819843
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||  |||||||||||||||||||||||||||| ||||||||    
T  41819793 tcattcttaaaacattcttgataaaatctttcttgatatataacattgctc 41819843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25581254 - 25581299
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcat 46  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||    
T  25581254 tcattcttgaaattttcttcgtaaaaactttcttgatatatagcat 25581299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27782132 - 27782181
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    ||||| |||||  |||||||||||||| ||||||||||||||||||||||    
T  27782132 tcattattgaatctttcttgataaaatatttcttgatatatagcattgct 27782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 30055587 - 30055542
Alignment:
Q  7 ttgaaattttcttgataaaatctttcttgatatatagcattgctca 52  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||    
T  30055587 ttgaaatttttttgataaaatcttccttggtatatagcattgctca 30055542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7022028 - 7021988
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatat 41  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  7022028 tcattcttgaatttttcttgagaaaatctttcttgatatat 7021988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3890459 - 3890413
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  3890459 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 3890413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24844873 - 24844919
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    ||||||||||| ||||||| ||||||| ||||||||||| |||||||    
T  24844873 tcattcttgaatttttcttaataaaatatttcttgatatgtagcatt 24844919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30835062 - 30835111
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| |||| | ||||||||||||||||||||||| ||||||||    
T  30835062 tcattcttgaattttt-tcgataaaatctttcttgatatataacattgctc 30835111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 37953216 - 37953281
Alignment:
Q  281 gagtcttgctaacaagtgtctttaggacgcatattaaagatacaaaaatggaaataattgataaat 346  Q
    ||||||||||| ||||||  |||||||| | | |||| ||| ||||||| ||||||||||||||||    
T  37953216 gagtcttgctatcaagtgcttttaggacacttgttaaggattcaaaaatagaaataattgataaat 37953281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 15972901 - 15972929
Alignment:
Q  25 aatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||    
T  15972901 aatctttcttgatatatagcattgctcat 15972929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28675198 - 28675148
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675198 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 28675148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33695342 - 33695392
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33695342 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 33695392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33696746 - 33696696
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33696746 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 33696696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17176036 - 17176088
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17176036 tcattcttgaaattttattgataaaatctttcttgatatatagcattgctcat 17176088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17705480 - 17705540
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaaaaaac 61  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  17705480 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcaacaaaaaac 17705540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6127325 - 6127275
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6127325 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 6127275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18365588 - 18365638
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18365588 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 18365638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18370852 - 18370902
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18370852 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 18370902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23291099 - 23291149
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23291099 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 23291149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25986980 - 25986930
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25986980 tcattcttgaaattttcttaataaaatctttcttgatatatagcattgctc 25986930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18889712 - 18889761
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18889712 tcattcttgaaattttcttgataaa-tctttcttgatatatagcattgctc 18889761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6031756 - 6031806
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  6031756 tcattcttaaaattttattgatgaaatctttcttgatatatagcattgctc 6031806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 30456792 - 30456878
Alignment:
Q  314 ttaaagatacaaaaatggaaataattgataaatcttaagtnnnnnnnnttactttttaaaatttcaatgcactgaatgcaccatttt 400  Q
    |||| |||||||||||||||||||||||||||| || |||        ||||||||||||||||||||  | ||||||||| |||||    
T  30456792 ttaaggatacaaaaatggaaataattgataaatttttagtataaaaagttactttttaaaatttcaatatattgaatgcacaatttt 30456878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 8515755 - 8515787
Alignment:
Q  16 tcttgataaaatctttcttgatatatagcattg 48  Q
    |||||||||||||||||||||||||||||||||    
T  8515755 tcttgataaaatctttcttgatatatagcattg 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11548603 - 11548647
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagca 45  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||    
T  11548603 tcattcttgaatttttcttgagaaaatttttcttgatatatagca 11548647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32702255 - 32702216
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  32702255 tcattcttgaaattttcatgaaaaaatctttcttgatata 32702216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 29481912 - 29481958
Alignment:
Q  362 ttactttttaaaatttcaatgcactgaatgcaccatttttaagataa 408  Q
    |||||||||||| ||||||| || |||||||| ||||||||||||||    
T  29481912 ttactttttaaagtttcaatacattgaatgcatcatttttaagataa 29481958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 2309455 - 2309488
Alignment:
Q  18 ttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||| ||||||||    
T  2309455 ttgataaaatctttcttgatatataacattgctc 2309488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 8082503 - 8082555
Alignment:
Q  362 ttactttttaaaatttcaatgcactgaatgcaccatttttaagataatatttc 414  Q
    |||||||||||| |||||||||| | ||||||||||||| |||| || |||||    
T  8082503 ttactttttaaagtttcaatgcatttaatgcaccattttcaagacaaaatttc 8082555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6043526 - 6043576
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6043526 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 6043576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11361146 - 11361198
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11361146 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 11361198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22913069 - 22913124
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaa 56  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  22913069 tcattcttgaatttttcttgaaaaaatctttcttgatatatagcattgctcattaa 22913124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2477686 - 2477636
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2477686 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 2477636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3362828 - 3362778
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3362828 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctc 3362778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38899741 - 38899791
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38899741 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctc 38899791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4434022 - 4434074
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  4434022 tcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcat 4434074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12850851 - 12850795
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaaa 57  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12850851 tcatttttggaattttcttgataaaatctttcttgatatatagcattgctcaataaa 12850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 14138716 - 14138668
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14138716 attcttgaaattttcttgataaaatctttcttgatatataacattgctc 14138668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33584344 - 33584396
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  33584344 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcat 33584396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3522021 - 3522076
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaa 56  Q
    ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  3522021 tcatttttgaaattttcttgaaaaaatctttcttgatatataacattgctcattaa 3522076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4892252 - 4892202
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  4892252 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 4892202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8145425 - 8145379
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8145425 tcattcttgaaattttcttgataaaatctttcttgatatataacatt 8145379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25398288 - 25398238
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  25398288 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 25398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37321808 - 37321859
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttctt-gatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  37321808 tcattcttaaaattttcttgataaaatctttcttagatatatagcattgctc 37321859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12614748 - 12614798
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  12614748 tcattcttgaatctttcttgataaaatatttcttgatatatagcattgctc 12614798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17545700 - 17545753
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatt 54  Q
    ||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||    
T  17545700 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctcatt 17545753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27481876 - 27481830
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  27481876 tcattcttgaatttttcttgataaaatctttcttaatacatagcatt 27481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10458447 - 10458409
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatat 39  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10458447 tcattcttgaatttttcttgataaaatttttcttgatat 10458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 414
Target Start/End: Complemental strand, 15965905 - 15965811
Alignment:
Q  320 atacaaaaatggaaataattgataaatcttaagtnnnnnnnnttactttttaaaatttcaatgcactgaatgcaccatttttaagataatatttc 414  Q
    ||||| |||| |||||||||||| ||| ||||||        |||| ||||||||||| |||||| |||||||||||||| ||||| || |||||    
T  15965905 atacacaaatagaaataattgatgaattttaagtagaaaaagttacattttaaaatttaaatgcattgaatgcaccatttctaagacaacatttc 15965811  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 13664679 - 13664642
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  13664679 tttcttgataaaatctttcttaatatataacattgctc 13664642  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 37706593 - 37706545
Alignment:
Q  366 tttttaaaatttcaatgcactgaatgcaccatttttaagataatatttc 414  Q
    |||||||| |||||||| | ||||||||| ||||||||||||| |||||    
T  37706593 tttttaaagtttcaatgtaatgaatgcacaatttttaagataagatttc 37706545  T

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Target: scaffold0471 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12892 - 12842
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12892 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 12842  T

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Target: scaffold0096 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41061 - 41011
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41061 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 41011  T

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Target: scaffold0085 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47900 - 47850
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47900 tcattcttgaaattttcttgataaaatctttcttgataaatagcattgctc 47850  T

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Target: scaffold0204 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4446 - 4391
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcattaa 56  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  4446 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctctttaa 4391  T

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Target: scaffold0665 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3118 - 3069
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  3118 tcattcttaaaattttattgataaaatctttcttgatatatagcattgct 3069  T

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Target: scaffold0228 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8452 - 8413
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8452 tcattcttgaaattttcttgataaaatctttcttgatata 8413  T

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Target: scaffold0228; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16034 - 15995
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16034 tcattcttgaaattttcttgataaaatctttcttgatata 15995  T

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Target: scaffold0228; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25986 - 25947
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25986 tcattcttgaaattttcttgataaaatctttcttgatata 25947  T

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