View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8055_high_4 (Length: 251)
Name: NF8055_high_4
Description: NF8055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8055_high_4 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 31095 - 31336
Alignment:
| Q |
10 |
attattctatcattaccagttattacaaaatgttccattaattgtaagctgccactaaatccaaaactgaactgttttgaatatgatatttccattaatt |
109 |
Q |
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| T |
31095 |
attattctatcattaccagttattacaaaatgttccattaattgtaagctgccactaaatccaaaactgaactgttttgaatatgatatttccattaatt |
31194 |
T |
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| Q |
110 |
gtatgctgccattatatccaaaacggaactgttttgaaaatgttgggcactgtttggtaacaaatcaagagtctgctaaaatcctaacatattcactatg |
209 |
Q |
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| T |
31195 |
gtatgctgccattatatccaaaacggaactgttttgaaaatgttgggcactgtttggtaacaaatcaagagtctgctaaaatcctaacatattcactatg |
31294 |
T |
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| Q |
210 |
tagaatatacatgatacattatccttctttatttctaaatta |
251 |
Q |
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| T |
31295 |
tagaatatacatgatacattatccttctttatttctaaatta |
31336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 104295 - 104192
Alignment:
| Q |
102 |
cattaattgtatgctgccattatatccaaaacggaactgttttgaaaatgttgggcactgtttggtaacaa---atcaagagtctgctaaaatcctaaca |
198 |
Q |
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| T |
104295 |
cattaattgtacactgccactatatcaaaaactgaacagtttttgaaattctaggcactaattggtaactacatatcaagagtctgctaaaatcctaaca |
104196 |
T |
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| Q |
199 |
tatt |
202 |
Q |
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| T |
104195 |
tatt |
104192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 14200107 - 14200039
Alignment:
| Q |
104 |
ttaattgtatgctgccattatatccaaaacggaactgttttgaaaatgttgggcactgtttggtaacaa |
172 |
Q |
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| T |
14200107 |
ttaattgtaaactgccacgatatccaaaactgaacagttttgaaaatgttaggcactgtttggtaacaa |
14200039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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