View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8055_low_4 (Length: 352)
Name: NF8055_low_4
Description: NF8055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8055_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 32197329 - 32197011
Alignment:
| Q |
23 |
cacagacagaaacaccgtggtaccccacaagaagataattg---ccgctcgttgggctagaaaaaaggacagtcgatgcgtgtgtgagattttttagtta |
119 |
Q |
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| T |
32197329 |
cacagacacaaacatcgtggtaccccacaagaagataactgttcccgctcattgggctagaaaaaaggacagtcgatgcgtgtgtgagattttttagtta |
32197230 |
T |
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| Q |
120 |
ggttgcctcctttccacacaagacctttgcatcagtactcagtcgtcattggagaatcttgtacggtcacctactcatgtggtggaccgatatgatgggc |
219 |
Q |
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| T |
32197229 |
ggttgcctcctttccacacaagaactttgcatcagtactcagtcgtcattggagaatcttgtacggtcacctactcatgtggtggaccgatatgatgggc |
32197130 |
T |
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| Q |
220 |
aacaattacaaatggtgatgccactaaacaagtgtagtagtagtggaaaagaatctgatgttgtgtttatcttttctgattcctagcctttttatttagc |
319 |
Q |
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| T |
32197129 |
aacaattacaaatggtgatgccactaaacaagtgtagcagtagtggaaaagaatctgatgttgtgtttatcttttctgattcctagcctttttatttagc |
32197030 |
T |
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| Q |
320 |
aagctcttgttgattgttt |
338 |
Q |
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||||||||||||||||||| |
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| T |
32197029 |
aagctcttgttgattgttt |
32197011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 11341077 - 11341229
Alignment:
| Q |
86 |
ggacagtcgatgcgtgtgtgagattttttagttaggttgcctcctttccacacaagacctttgcatcagtactcagtcgtcattggagaatcttgtacgg |
185 |
Q |
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| T |
11341077 |
ggacagccgatgtgtgtgtgagatttt--agtcaggttgcctccttttctcataagacctctgcatacttactcagtcgtctttggagaatcttgtacgg |
11341174 |
T |
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| Q |
186 |
tcacctactcatgtggtggaccgatatgatgggcaacaattacaaatggtgatgcc |
241 |
Q |
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| T |
11341175 |
tcacttactcatgtggtggaccaatatgatggacaa-aattacgaatggtgatgcc |
11341229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 11499096 - 11499248
Alignment:
| Q |
86 |
ggacagtcgatgcgtgtgtgagattttttagttaggttgcctcctttccacacaagacctttgcatcagtactcagtcgtcattggagaatcttgtacgg |
185 |
Q |
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| T |
11499096 |
ggacagccgatgtgtgtgtgagatttt--agtcaggttgcctccttttctcataagacctctgcatacttactcagtcgtctttggagaatcttgtacgg |
11499193 |
T |
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| Q |
186 |
tcacctactcatgtggtggaccgatatgatgggcaacaattacaaatggtgatgcc |
241 |
Q |
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| T |
11499194 |
tcacttactcatgtggtggaccaatatgatggacaa-aattacgaatggtgatgcc |
11499248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 11341286 - 11341345
Alignment:
| Q |
279 |
gttgtgtttatcttttctgattcctagcctttttatttagcaagctcttgttgattgttt |
338 |
Q |
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|||||| |||||||||||||||| ||||||| ||||||||| |||| ||||||||||||| |
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| T |
11341286 |
gttgtggttatcttttctgattcatagccttgttatttagctagctgttgttgattgttt |
11341345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 11499305 - 11499364
Alignment:
| Q |
279 |
gttgtgtttatcttttctgattcctagcctttttatttagcaagctcttgttgattgttt |
338 |
Q |
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|||||| |||||||||||||||| ||||||| ||||||||| |||| ||||||||||||| |
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| T |
11499305 |
gttgtggttatcttttctgattcatagccttgttatttagctagctgttgttgattgttt |
11499364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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