View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8055_low_6 (Length: 251)
Name: NF8055_low_6
Description: NF8055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8055_low_6 |
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| [»] scaffold0037 (3 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31744 - 31979
Alignment:
| Q |
1 |
ataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagccaaaacaacgaagaatagcagtaaacctttctaaagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31744 |
ataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagccaaaacaacgaagaatagcagtaaacctttctaaagcaa |
31843 |
T |
|
| Q |
101 |
atcagaaacaatattcattaatcactaaaatagaaagaaacggtatcataataaagtcaggactgacatcagcataaaatataagggatgcaataaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31844 |
atcagaaacaatattcattaatcactaaaatagaaagaaacggtatcataataaagtcaggactgacatcagcataaaatataagggatgcaataaagaa |
31943 |
T |
|
| Q |
201 |
aaactaaagaaatactttgatgaatgtacctgttga |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31944 |
aaactaaagaaatactttgatgaatgtacctgttga |
31979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 103640 - 103572
Alignment:
| Q |
166 |
acatcagcataaaatataagggatgcaataaagaaaaactaaagaaatactttgatgaatgtacctgtt |
234 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
103640 |
acattagcataaaatataagggatgtgataaagaaaaactaaagaaatacttcgatgaatgtacctgtt |
103572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 103736 - 103676
Alignment:
| Q |
1 |
ataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagc |
61 |
Q |
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| T |
103736 |
ataaatttcaaatatgacattatggcaatacgatccgaagataattaacagattagaaagc |
103676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 10426368 - 10426567
Alignment:
| Q |
5 |
atttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagccaaaacaacgaagaatagcagtaaacctttctaaagcaaatca |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
10426368 |
atttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagccaaaacaatgaagaatagcagtaaacctttcaaaagcaaatca |
10426467 |
T |
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| Q |
105 |
gaaacaatattcattaatcactaaaatagaaagaaacggtatc---ataataaagtcaggactgacatcagcataaaatataagggatgcaataaagaaa |
201 |
Q |
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| T |
10426468 |
gaaacaatattcattaatcactaaaatagaaagaaacagtatcataataataaagtcaggactgacatcagcataaaatataagggatgcaataaagaaa |
10426567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7892270 - 7892042
Alignment:
| Q |
1 |
ataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagccaaaacaacgaagaatagcagtaaacctttctaaagcaa |
100 |
Q |
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||||||||||||||||||||||||||| | |||| ||| |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
7892270 |
ataaatttcaaatatgacattatagcattacgatatgaagacgattaacagtttagaaagccaaaataacgaacaatagcagtaaacctttctaaagcaa |
7892171 |
T |
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| Q |
101 |
atcagaaacaatattcattaatcactaaaatagaaagaaacggtatcataataaagtcaggactgacatcagcataaaatataagggatgcaataaagaa |
200 |
Q |
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|| |||||||||||| |||||||||||||||||||||| || |||||||| | | ||| | ||||| | ||||||||||||||||||||||||||| |
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| T |
7892170 |
ataagaaacaatatttattaatcactaaaatagaaagatacaatatcataa-accgacagta-aaacatcggtataaaatataagggatgcaataaagaa |
7892073 |
T |
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| Q |
201 |
aaactaaagaaatactttgatgaatgtacct |
231 |
Q |
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||||||| ||||||||| ||||||||||||| |
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| T |
7892072 |
aaactaaggaaatacttcgatgaatgtacct |
7892042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 10426560 - 10426589
Alignment:
| Q |
205 |
taaagaaatactttgatgaatgtacctgtt |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10426560 |
taaagaaatactttgatgaatgtacctgtt |
10426589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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