View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8056_high_5 (Length: 273)

Name: NF8056_high_5
Description: NF8056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8056_high_5
NF8056_high_5
[»] chr3 (6 HSPs)
chr3 (59-146)||(112714-112801)
chr3 (60-146)||(109986-110072)
chr3 (186-261)||(110112-110189)
chr3 (60-133)||(23291439-23291512)
chr3 (186-256)||(112598-112673)
chr3 (50-120)||(47667321-47667391)
[»] chr4 (3 HSPs)
chr4 (60-146)||(30367408-30367494)
chr4 (60-115)||(30366742-30366797)
chr4 (186-240)||(30367310-30367368)
[»] chr7 (2 HSPs)
chr7 (63-146)||(24601393-24601476)
chr7 (186-261)||(24601505-24601585)
[»] chr6 (3 HSPs)
chr6 (93-146)||(20647769-20647822)
chr6 (186-261)||(20647650-20647729)
chr6 (59-130)||(24715127-24715198)
[»] chr5 (1 HSPs)
chr5 (1-58)||(41479709-41479766)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 112801 - 112714
Alignment:
Q  59 tgagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112801 tgagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 112714  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 109986 - 110072
Alignment:
Q  60 gagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  109986 gagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 110072  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 110112 - 110189
Alignment:
Q  186 catctttatcacgtccctggttgttgcttaacatcatcc--cacgcccttcctctacggttacggttatgatctttat 261  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  110112 catctttatcacgtccctggttgttgcttaacatcatcccacacgcccttcctctacagttacggttatgatctttat 110189  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 23291512 - 23291439
Alignment:
Q  60 gagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctgcca 133  Q
    |||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||    
T  23291512 gagtttaattgtggtgcaccgacagtgtaaatgctctttgcacagtcatccaatagtattgcagtattctgcca 23291439  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 112673 - 112598
Alignment:
Q  186 catctttatcacgtccctggttgtt-gcttaacatc--atcccac--gcccttcctctacggttacggttatgatc 256  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||  ||||||||||||| |||||||||||||||    
T  112673 catctttatcacgtccctggttgtttgcttaacatcgtatcccacacgcccttcctctacagttacggttatgatc 112598  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 47667321 - 47667391
Alignment:
Q  50 atttctttatgagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattg 120  Q
    |||| ||||||||||||||| | |||||| |||||||||||| |   ||||||||||| ||||||| ||||    
T  47667321 atttatttatgagtttaattatagtgcactgacagtgtaaagacatattacacactcaaccaatagcattg 47667391  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 30367494 - 30367408
Alignment:
Q  60 gagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 146  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30367494 gagtttaattttggtacaccgacagtgtaaaggatctttacacactcatccaatagtattgcagcattctgtcacatcagtttaatg 30367408  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 30366742 - 30366797
Alignment:
Q  60 gagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatag 115  Q
    |||||||||| || ||||| |||| ||||||| |||||||||||||||||||||||    
T  30366742 gagtttaattatgatgcactgacactgtaaagactctttacacactcatccaatag 30366797  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 30367368 - 30367310
Alignment:
Q  186 catctttatcacgtccctggttgttgcttaacatcat----cccacgcccttcctctac 240  Q
    ||||||||||||||||||||||||| |||||||||||    | ||||||||||||||||    
T  30367368 catctttatcacgtccctggttgttccttaacatcatatcccacacgcccttcctctac 30367310  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 24601393 - 24601476
Alignment:
Q  63 tttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 146  Q
    |||||||||||| |||||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  24601393 tttaattttggtccaccgacaatgtaaaggctctttgaacactcatccaataatattgcagcattctgccacatcagtttaatg 24601476  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 24601505 - 24601585
Alignment:
Q  186 catctttatcacgtccctgg-ttgttgcttaacatcatcccac----gcccttcctctacggttacggttatgatctttat 261  Q
    |||||||||||||||||||| |||||||||||||||||  |||    ||||||||||||| | ||||||||||||||||||    
T  24601505 catctttatcacgtccctgggttgttgcttaacatcatatcacacatgcccttcctctacagatacggttatgatctttat 24601585  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 20647822 - 20647769
Alignment:
Q  93 ctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20647822 ctctttacacactcatccaatagtattgcagcattctgccacatcagtttaatg 20647769  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 20647729 - 20647650
Alignment:
Q  186 catctttatcacgtccctggttgttgcttaacatcat----cccacgcccttcctctacggttacggttatgatctttat 261  Q
    |||||||||||||||| ||||||||||||||||||||    | |||||||||||||||| ||||||||||||||||||||    
T  20647729 catctttatcacgtccttggttgttgcttaacatcatatctcacacgcccttcctctacagttacggttatgatctttat 20647650  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 24715127 - 24715198
Alignment:
Q  59 tgagtttaattttggtgcaccgacagtgtaaaggctctttacacactcatccaatagtattgcagcattctg 130  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||| |||| |||||||||||||| ||||||    
T  24715127 tgagtttaattgtggtgcaccgacagtgtaaagaatctttgcacaatcattcaatagtattgcagtattctg 24715198  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41479709 - 41479766
Alignment:
Q  1 tagtcaatgaagttattttggtccctaccatatagatttgtaatgcaatatttcttta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41479709 tagtcaatgaagttattttggtccctaccatatagatttgtaatgcaatattttttta 41479766  T

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