View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8056_high_8 (Length: 210)
Name: NF8056_high_8
Description: NF8056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8056_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 16337027 - 16336849
Alignment:
| Q |
20 |
tctcgccgtccataacaataaaagtcatttatttttgggtagaagaagcaggcagtgtctagaaatatgtcacgttgagtacgatctaagtcatagaaac |
119 |
Q |
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| T |
16337027 |
tctcgccgtccataacaataaaagtgatttatttttgggtagaagaagcaggcaatgtctagaaatatgtcacgttgagtacgatctaagtcatagaaac |
16336928 |
T |
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| Q |
120 |
tcaattttaacacatcatgaattcctgcataaggattctcttttatcttttccaattcactttcccatgcttctctgct |
198 |
Q |
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| T |
16336927 |
tcagttttaacacatcatgaattcctgcataaggaatctcttttatcttttccaattcactttcacatgcttctttgct |
16336849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 16122184 - 16122351
Alignment:
| Q |
31 |
ataacaataaaagtcatttatttttgggtagaagaagcaggcagtgtctagaaatatgtcacgttgagtacgatctaagtcatagaaactcaattttaac |
130 |
Q |
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| T |
16122184 |
ataacaatcaaattcatttattgttgggtagaagaagcaggcaatgtctagaaatatgtcacgttgagtacgatctaagtcatagaaactcaattttaac |
16122283 |
T |
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| Q |
131 |
acatcatgaattcctgcataaggattctcttttatcttttccaattcactttcccatgcttctctgct |
198 |
Q |
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| T |
16122284 |
acatcatgaattcctgcataaggaatctcttttatcttttccaattcactttcccatgcttctttgct |
16122351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 12896526 - 12896380
Alignment:
| Q |
52 |
ttttgggtagaagaagcaggcagtgtctagaaatatgtcacgttgagtacgatctaagtcatagaaactcaattttaacacatcatgaattcctgcataa |
151 |
Q |
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| T |
12896526 |
ttttgagtaggagaagcatgcaatatctagaaatatgtcttcctgagtacgatctaagtcatcgaaactcaattttaacacatcatgaattctcccataa |
12896427 |
T |
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| Q |
152 |
ggattctcttttatcttttccaattcactttcccatgcttctctgct |
198 |
Q |
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| T |
12896426 |
ggaatcttttttatcttttccaattcacttgcccatgcttctttgct |
12896380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 36002990 - 36003127
Alignment:
| Q |
61 |
gaagaagcaggcagtgtctagaaatatgtcacgttgagtacgatctaagtcatagaaactcaattttaacacatcatgaattcctgcataaggattctct |
160 |
Q |
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| T |
36002990 |
gaagaagcatgcaatgtctaaaaatatctcctgttgagtacgatctaagtcatcgaaactcaattttagcacatcatgaattctcccattaggaatcttt |
36003089 |
T |
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| Q |
161 |
tttatcttttccaattcactttcccatgcttctctgct |
198 |
Q |
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| T |
36003090 |
ttgagcttttccaattcactttcccatgcttctttgct |
36003127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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