View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8056_low_2 (Length: 777)

Name: NF8056_low_2
Description: NF8056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8056_low_2
NF8056_low_2
[»] chr4 (9 HSPs)
chr4 (15-759)||(3691166-3691894)
chr4 (134-174)||(22492922-22492962)
chr4 (236-354)||(21637743-21637859)
chr4 (135-171)||(4400731-4400767)
chr4 (134-171)||(5409491-5409528)
chr4 (15-114)||(24635505-24635605)
chr4 (315-354)||(17892326-17892365)
chr4 (141-171)||(49069467-49069497)
chr4 (134-171)||(24016624-24016660)
[»] chr3 (10 HSPs)
chr3 (33-117)||(29715928-29716009)
chr3 (15-79)||(21382066-21382130)
chr3 (135-171)||(29715906-29715942)
chr3 (135-173)||(21382149-21382187)
chr3 (236-296)||(30226555-30226613)
chr3 (134-169)||(1553757-1553792)
chr3 (132-170)||(3116648-3116686)
chr3 (140-170)||(7754335-7754365)
chr3 (134-171)||(15769173-15769210)
chr3 (140-169)||(30226717-30226746)
[»] chr5 (6 HSPs)
chr5 (315-422)||(15066148-15066255)
chr5 (241-350)||(19321455-19321563)
chr5 (24-77)||(19321719-19321772)
chr5 (135-171)||(21317404-21317440)
chr5 (135-171)||(41472438-41472474)
chr5 (134-169)||(12190645-12190680)
[»] chr7 (9 HSPs)
chr7 (197-354)||(23311797-23311954)
chr7 (237-303)||(12086967-12087033)
chr7 (134-171)||(18113760-18113797)
chr7 (33-85)||(27388320-27388372)
chr7 (141-171)||(7416874-7416904)
chr7 (315-357)||(21179908-21179950)
chr7 (141-171)||(49014905-49014935)
chr7 (134-171)||(3393250-3393287)
chr7 (345-422)||(30403903-30403980)
[»] scaffold0007 (2 HSPs)
scaffold0007 (215-295)||(181028-181108)
scaffold0007 (134-171)||(180945-180982)
[»] chr2 (7 HSPs)
chr2 (197-302)||(33741869-33741976)
chr2 (134-171)||(25933819-25933856)
chr2 (134-171)||(43214830-43214867)
chr2 (134-170)||(33737771-33737807)
chr2 (315-357)||(14824213-14824255)
chr2 (315-356)||(2319351-2319392)
chr2 (134-171)||(13289729-13289766)
[»] chr8 (6 HSPs)
chr8 (212-304)||(34139763-34139856)
chr8 (134-171)||(30804568-30804605)
chr8 (33-77)||(13415400-13415444)
chr8 (134-169)||(12358144-12358179)
chr8 (134-169)||(12359272-12359307)
chr8 (134-171)||(17702760-17702797)
[»] chr1 (5 HSPs)
chr1 (134-171)||(8829505-8829542)
chr1 (315-353)||(41675990-41676028)
chr1 (134-171)||(2222796-2222833)
chr1 (315-356)||(14167160-14167201)
chr1 (134-171)||(40776257-40776294)
[»] chr6 (1 HSPs)
chr6 (33-117)||(2423038-2423123)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 15 - 759
Target Start/End: Original strand, 3691166 - 3691894
Alignment:
Q  15 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgacaatt 114  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3691166 aatatcagcgttcttaactcaacaaaaagagacaaaacagataatgaacaacaacatatatataattataataacattgttgataatgaaagtgacaatt 3691265  T
Q  115 agttccttnnnnnnnn-tatgaaagtgacaattagtcaattacatatatgatatatcccaatnnnnnnncactatagtagttcattacacatatctaaaa 213  Q
    ||||||||         ||||||||||||||||||||||||||||||||||||||| ||||        |||||  ||||||||||||||||||| ||||    
T  3691266 agttcctttaaaaaaaatatgaaagtgacaattagtcaattacatatatgatatattccaaaaagaaaacacta--gtagttcattacacatatccaaaa 3691363  T
Q  214 aataatagaaacatcgtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnnnnnn 313  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||             
T  3691364 aataatagaaacattgtatccgacacatatcggttttccacagtctatccctcgcgtatccctgatgtatctgaaaagtatcatacaattgttttttttt 3691463  T
Q  314 naaataaaatttaatctccggatactcttccgatacatatcagagcatatcggtcagatatcggtacataatatgtatcggatacgatatataatctatt 413  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||           |||||||| |||| ||||||| || || |||||||    
T  3691464 -aaataaaatttaatctccgaatactcttccgatacatatcagagcatatcggt-----------acataatacgtattggatacggtacatcatctatt 3691551  T
Q  414 ttgaagtatccgtccttgagagcaatcggtagaatacctgaaacatgttcttgtattagcggggagtgtaatttcctatactttt-aaatgtgtaatgtg 512  Q
    || ||||||||||||||||||| |||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3691552 ttaaagtatccgtccttgagaggaatccgtataatagcttaaacatgttcttgtattagcggggagtgtaatttcctatactttttaaatgtgtaatgtg 3691651  T
Q  513 cagatctctatttgcaaagctataactaagatatgaagtgttgactttctctaaattaatgacagaatctagattctcttgttgcagaagaggtgagatt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3691652 cagatctctatttgcaaagctataactaagatatgaagtgttgactttctctaaatttatgactgaatctagattctcttgttgcagaagaggtgagatt 3691751  T
Q  613 ctatagcagaagaaaattctaaagaaaagaaatagttttacatgtggcaagttggtatgttattttttccttcaaaaattgcatatgctgctgcaccttg 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  3691752 ctatagcagaagaaaattctaaagaaaagaaatagttttacatgtggcaagttggtatgttattttttccttcaaaaattgcata---tgctgcaccttg 3691848  T
Q  713 caagcaagcatcgtagcgacactagatgcaaatccaaatgcagagaa 759  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  3691849 caagcaagcatcgtggcgacactagatgcaaa-ccaaatgcagagaa 3691894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 22492922 - 22492962
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcccaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22492922 gaaagtgacaattagtcaattacatatatgatatatcccaa 22492962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 236 - 354
Target Start/End: Complemental strand, 21637859 - 21637743
Alignment:
Q  236 gcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnnnnnnnaaataaaatttaatctccgga 335  Q
    ||||||||||||||||||| | ||||||||  ||||||||  ||||||||||||||||||| | |||||          |||||||||||||||| ||||    
T  21637859 gcacatatcggttttccaccgcctatccct--cgtatcccagatgtatctgaaaagtatcagataattgttttttaaaaaaataaaatttaatcttcgga 21637762  T
Q  336 tactcttccgatacatatc 354  Q
    |||||| | ||||| ||||    
T  21637761 tactctcctgatacgtatc 21637743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 4400767 - 4400731
Alignment:
Q  135 aaagtgacaattagtcaattacatatatgatatatcc 171  Q
    |||||||||||||||||||||||||||||||||||||    
T  4400767 aaagtgacaattagtcaattacatatatgatatatcc 4400731  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 5409528 - 5409491
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5409528 gaaagcgacaattagtcaattacatatatgatatatcc 5409491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 24635505 - 24635605
Alignment:
Q  15 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataattataa-taacattgttgataatgaaagtgacaat 113  Q
    ||||||||| |||| || ||||||||||||||||| ||||| | |  ||||||||| |||||||| || || ||| |||| | |||| ||||||||||||    
T  24635505 aatatcagctttctcaaaacaacaaaaagagacaatacagacattcgacaacaacaaaaatataaatacaagtaatattgattataacgaaagtgacaat 24635604  T
Q  114 t 114  Q
    |    
T  24635605 t 24635605  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 17892365 - 17892326
Alignment:
Q  315 aaataaaatttaatctccggatactcttccgatacatatc 354  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  17892365 aaataaaatttaatcttcggatactcttctgatacatatc 17892326  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 49069497 - 49069467
Alignment:
Q  141 acaattagtcaattacatatatgatatatcc 171  Q
    |||||||||||||||||||||||||||||||    
T  49069497 acaattagtcaattacatatatgatatatcc 49069467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 24016624 - 24016660
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24016624 gaaagtgacaattagtcaattac-tatatgatatatcc 24016660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 29716009 - 29715928
Alignment:
Q  33 acaacaaaaagagacaaaa-cagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgacaattagt 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    | |||||||| | ||||| |||||||||||||||    
T  29716009 acaacaaaaagagacaaaaacagataatgaacaacaacataaatataa----agtaacattgataataataaaagtgacaattagt 29715928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 21382066 - 21382130
Alignment:
Q  15 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataa 79  Q
    |||||||||||||| ||  ||||||||||| |||||| ||||||||||||| ||||||| |||||    
T  21382066 aatatcagcgttctcaaaccaacaaaaagatacaaaatagataatgaacaaaaacataagtataa 21382130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 29715942 - 29715906
Alignment:
Q  135 aaagtgacaattagtcaattacatatatgatatatcc 171  Q
    |||||||||||||||||||||||||||||||||||||    
T  29715942 aaagtgacaattagtcaattacatatatgatatatcc 29715906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 21382149 - 21382187
Alignment:
Q  135 aaagtgacaattagtcaattacatatatgatatatccca 173  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21382149 aaagtgacaattagtcgattacatatatgatatatccca 21382187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 30226613 - 30226555
Alignment:
Q  236 gcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatca 296  Q
    ||||||||||||||||||| | |||||||||   |||||| ||||||||||||||||||||    
T  30226613 gcacatatcggttttccaccgcctatccctca--tatcccaaatgtatctgaaaagtatca 30226555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 1553757 - 1553792
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatat 169  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1553757 gaaagtgacaactagtcaattacatatatgatatat 1553792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 3116686 - 3116648
Alignment:
Q  132 atgaaagtgacaattagtcaattacatatatgatatatc 170  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3116686 atgaaagtgacaattagtcgaatacatatatgatatatc 3116648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 170
Target Start/End: Complemental strand, 7754365 - 7754335
Alignment:
Q  140 gacaattagtcaattacatatatgatatatc 170  Q
    |||||||||||||||||||||||||||||||    
T  7754365 gacaattagtcaattacatatatgatatatc 7754335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 15769210 - 15769173
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  15769210 gaaagcgacaattagtcaattacatatatcatatatcc 15769173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 30226746 - 30226717
Alignment:
Q  140 gacaattagtcaattacatatatgatatat 169  Q
    ||||||||||||||||||||||||||||||    
T  30226746 gacaattagtcaattacatatatgatatat 30226717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 315 - 422
Target Start/End: Complemental strand, 15066255 - 15066148
Alignment:
Q  315 aaataaaatttaatctccggatactcttccgatacatatcagagcatatcggtcagatatcggtacataatatgtatcggatacgatatataatctattt 414  Q
    |||||||||||||||  | |||||||||||||||| |||| ||  ||||||| ||||||||||| || ||||   || |||||||||| || ||||||||    
T  15066255 aaataaaatttaatcatctgatactcttccgatacgtatcggaaaatatcgggcagatatcggtgcagaatacacatgggatacgatacatcatctattt 15066156  T
Q  415 tgaagtat 422  Q
    ||||||||    
T  15066155 tgaagtat 15066148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 19321563 - 19321455
Alignment:
Q  241 tatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnnnnnnnaaataaaatttaatctccggatactc 340  Q
    |||||||||||||| | |||||||||||||||||   ||||||||||||||||||| |||||||          |||||||||||||||| |||||||||    
T  19321563 tatcggttttccactgcctatccctcgcgtatccacgatgtatctgaaaagtatcagacaattg-gtttttttaaaataaaatttaatcttcggatactc 19321465  T
Q  341 ttccgataca 350  Q
    ||| ||||||    
T  19321464 ttctgataca 19321455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 19321772 - 19321719
Alignment:
Q  24 gttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatat 77  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  19321772 gttctcaaaacaacaaaaagagacaaaacaaataatgaacaacaacataaatat 19321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 21317440 - 21317404
Alignment:
Q  135 aaagtgacaattagtcaattacatatatgatatatcc 171  Q
    |||||||||||||||||||||||||||| ||||||||    
T  21317440 aaagtgacaattagtcaattacatatattatatatcc 21317404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 41472438 - 41472474
Alignment:
Q  135 aaagtgacaattagtcaattacatatatgatatatcc 171  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41472438 aaagcgacaattagtcaattacatatatgatatatcc 41472474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 12190680 - 12190645
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatat 169  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12190680 gaaagcgacaattagtcaattacatatatgatatat 12190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 23311954 - 23311797
Alignment:
Q  197 attacacatatctaaaaaataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtat 294  Q
    |||||| ||||  |||| ||||||||||||||  | | || ||||||||||||||||||| | ||||||||  ||||||||  |||||||||||||||||    
T  23311954 attacatatatacaaaatataatagaaacatcaagcagcctgcacatatcggttttccaccgcctatccct--cgtatcccagatgtatctgaaaagtat 23311857  T
Q  295 catacaattgnnnnnnnnnnaaataaaatttaatctccggatactcttccgatacatatc 354  Q
     | | |||||          |||||||||||||||| |||||||||| | ||||||||||    
T  23311856 tagataattgtttttaaaaaaaataaaatttaatcttcggatactctcctgatacatatc 23311797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 12087033 - 12086967
Alignment:
Q  237 cacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaatt 303  Q
    |||||||| ||||||||| |||||||||||||||||||  | | ||| |||||||||||| ||||||    
T  12087033 cacatatcagttttccactgtctatccctcgcgtatcctcactttatttgaaaagtatcaaacaatt 12086967  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 18113760 - 18113797
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  18113760 gaaagcgacaattagtcaattacatatatgatatatcc 18113797  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 27388372 - 27388320
Alignment:
Q  33 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattataa 85  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| || |||||    
T  27388372 acaacaaaaagagataaaacaaataatgaacaacaacatagatacaaatataa 27388320  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 7416904 - 7416874
Alignment:
Q  141 acaattagtcaattacatatatgatatatcc 171  Q
    |||||||||||||||||||||||||||||||    
T  7416904 acaattagtcaattacatatatgatatatcc 7416874  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 357
Target Start/End: Complemental strand, 21179950 - 21179908
Alignment:
Q  315 aaataaaatttaatctccggatactcttccgatacatatcaga 357  Q
    |||||||||||||||| |||||||||| | |||||||||||||    
T  21179950 aaataaaatttaatcttcggatactctcctgatacatatcaga 21179908  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 49014905 - 49014935
Alignment:
Q  141 acaattagtcaattacatatatgatatatcc 171  Q
    |||||||||||||||||||||||||||||||    
T  49014905 acaattagtcaattacatatatgatatatcc 49014935  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 3393287 - 3393250
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  3393287 gaaagcgacaattagtcaattacatatataatatatcc 3393250  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 30403980 - 30403903
Alignment:
Q  345 gatacatatcagagcatatcggtcagatatcggtacataatatgtatcggatacgatatataatctattttgaagtat 422  Q
    ||||| |||| || |||||||  ||| ||||||||||| ||| ||||| ||||||||| || ||| ||||||||||||    
T  30403980 gatacgtatcggaacatatcgaacaggtatcggtacatgatacgtatctgatacgatacatcatcaattttgaagtat 30403903  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 181028 - 181108
Alignment:
Q  215 ataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatc 295  Q
    ||||||||||||||  ||| || ||||||||||||||||||| | ||||||||  ||||||||  ||||||||||||||||||    
T  181028 ataatagaaacatcaggtagcccgcacatatcggttttccactgcctatccct--cgtatcccagatgtatctgaaaagtatc 181108  T

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Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 180945 - 180982
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  180945 gaaagcgacaattagtcaattacatatatgatatatcc 180982  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 33741869 - 33741976
Alignment:
Q  197 attacacatatctaaaaaataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtat 294  Q
    |||||| |||||  |||||||||| |||||||  |||||| || | ||||| |||||||| | ||||||||||||||| | | ||||||||||||| |||    
T  33741869 attacatatatcccaaaaataataaaaacatcatgtatcccgcgcgtatcgattttccaccgactatccctcgcgtattcttgatgtatctgaaaaatat 33741968  T
Q  295 catacaat 302  Q
    || |||||    
T  33741969 cagacaat 33741976  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 25933856 - 25933819
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25933856 gaaagcgacaattagtcaattacatatatgatatatcc 25933819  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 43214867 - 43214830
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  43214867 gaaagcgacaattagtcaattacatatatgatatatcc 43214830  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 33737771 - 33737807
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatc 170  Q
    |||||| ||||||||||||||||||||||||||||||    
T  33737771 gaaagtaacaattagtcaattacatatatgatatatc 33737807  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 357
Target Start/End: Complemental strand, 14824255 - 14824213
Alignment:
Q  315 aaataaaatttaatctccggatactcttccgatacatatcaga 357  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  14824255 aaataaaatttaatcttcggatactcttctgatacgtatcaga 14824213  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 2319392 - 2319351
Alignment:
Q  315 aaataaaatttaatctccggatactcttccgatacatatcag 356  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  2319392 aaataaaatttaatcttcggatactcttctgatacgtatcag 2319351  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 13289766 - 13289729
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  13289766 gaaagcgacaattagtaaattacatatatgatatatcc 13289729  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 34139856 - 34139763
Alignment:
Q  212 aaaataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattg 304  Q
    |||||||||||||||||  ||||||| ||| ||||| |||||||| ||| ||| | | ||||||||  ||||||||||||||||||| |||||||    
T  34139856 aaaataatagaaacatcatgtatccg-cacgtatcgattttccaccgtcaatcgcccacgtatccccgatgtatctgaaaagtatcaaacaattg 34139763  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 30804568 - 30804605
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30804568 gaaagcgacaattagtcaattacatatatgatatatcc 30804605  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 13415444 - 13415400
Alignment:
Q  33 acaacaaaaagagacaaaacagataatgaacaacaacataaatat 77  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||    
T  13415444 acaataaaaagagacaaaacatataattaacaacaacataaatat 13415400  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 12358179 - 12358144
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatat 169  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12358179 gaaagcgacaattagtcaattacatatatgatatat 12358144  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 12359307 - 12359272
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatat 169  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12359307 gaaagcgacaattagtcaattacatatatgatatat 12359272  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 17702797 - 17702760
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  17702797 gaaaatgacatttagtcaattacatatatgatatatcc 17702760  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 8829505 - 8829542
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  8829505 gaaagcgacaattagtcaattacatatatgatatatcc 8829542  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 41675990 - 41676028
Alignment:
Q  315 aaataaaatttaatctccggatactcttccgatacatat 353  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  41675990 aaataaaatttaatcttcggatactcttccaatacatat 41676028  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 2222796 - 2222833
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  2222796 gaaagcgacaattaatcaattacatatatgatatatcc 2222833  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 14167201 - 14167160
Alignment:
Q  315 aaataaaatttaatctccggatactcttccgatacatatcag 356  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  14167201 aaataaaatttaatcttcggatactcttctgatacgtatcag 14167160  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 40776294 - 40776257
Alignment:
Q  134 gaaagtgacaattagtcaattacatatatgatatatcc 171  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40776294 gaaagcgaaaattagtcaattacatatatgatatatcc 40776257  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 2423123 - 2423038
Alignment:
Q  33 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattat-aataacattgttgataatgaaagtgacaattagt 117  Q
    |||| |||||||||||||| | | | || ||||||||||||||| || ||| ||||| |||| | |||| ||||||||||||||||    
T  2423123 acaataaaaagagacaaaagatacactggacaacaacataaataaaaatataaataatattgataataaagaaagtgacaattagt 2423038  T

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