View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8056_low_3 (Length: 553)
Name: NF8056_low_3
Description: NF8056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8056_low_3 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 32 - 553
Target Start/End: Original strand, 40116974 - 40117495
Alignment:
| Q |
32 |
tacaattcatcttggctttattcaacgaccctcccactcagtgctcttaacattcattctaggtcctgtttcgtttcgtgtgaactttcgcatttgatca |
131 |
Q |
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| T |
40116974 |
tacaattcatcttggctttattcaacgacaatccgattcagtgctcttaacatttattctaggtcctgtttcgtttcgtgtgaactttcgcagttgatca |
40117073 |
T |
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| Q |
132 |
aggtgcattgtatgtctcttgttctgtcctcccaattctcgagtgtttttcgcaacttctcgatgagatcatgattcgtggcgagttcttgattgtttct |
231 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
40117074 |
aggtgcattgtatgtctcttgttttgtcctcccaattctcgagtgtttttcgcaacttctcgatgagaccatgattcatggcgagttcttgattgtttct |
40117173 |
T |
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| Q |
232 |
caatgttgctagatcatgannnnnnnnnnnnnncgatcgtaattctaagtttgtgtatgattcagattctcgtgaccaagattcatgctcgctcatgatt |
331 |
Q |
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| T |
40117174 |
caatgttgctagatcatgatttttggtttttttcgatcgtaattctaagtttatgtatgattcagattctcgtgaccaagattcatgctcgttcatgatt |
40117273 |
T |
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| Q |
332 |
gttttgttcttgcttgaaattcataactttttatcttattttggtgtttaatggtaaatttggctagtgcaccaaacccttcaagtaatattgtagtaag |
431 |
Q |
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| T |
40117274 |
gttttgttcttgcttggaattcataactttttatcttattttggtatttaatggtaaatttggctagtgcaccaaacccttcaagtaatattgtagtaag |
40117373 |
T |
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| Q |
432 |
attaacgtcttcacatgaattgttgttttcgactcgataatttactaaaattataatgnnnnnnngtaaattgaggggagtttgcaagatttattgactt |
531 |
Q |
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| T |
40117374 |
attaacgtcttcacatgaattgttgttttcgactcgataatttactaaaattataatgaaaaaaagtaaactgaagggagtttgcaagatttattgactt |
40117473 |
T |
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| Q |
532 |
gtaatgaaaactaaatagattt |
553 |
Q |
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| T |
40117474 |
gtaatgaaaactaaatagattt |
40117495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 399 - 552
Target Start/End: Complemental strand, 24762668 - 24762515
Alignment:
| Q |
399 |
tgcaccaaacccttcaagtaatattgtagtaagattaacgtcttcacatgaattgttgttttcgactcgataatttactaaaattataatgnnnnnnngt |
498 |
Q |
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| T |
24762668 |
tgcatcaaaccgttcaagtgatatagtagtaatattatcgtcttctcaaggattgttgttttcaacttgaaaatttactaaacttataattaaaaaaagt |
24762569 |
T |
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| Q |
499 |
aaattgaggggagtttgcaagatttattgacttgtaatgaaaactaaatagatt |
552 |
Q |
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| T |
24762568 |
aaattgggaggagtttgcaagatttgttgatttgcattgaaaagtaaatagatt |
24762515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 553
Target Start/End: Original strand, 29917450 - 29917506
Alignment:
| Q |
497 |
gtaaattgaggggagtttgcaagatttattgacttgtaatgaaaactaaatagattt |
553 |
Q |
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| T |
29917450 |
gtaaattgggggaagtttacaagatttgtttatttgtaatgaaaattaaatagattt |
29917506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 553
Target Start/End: Original strand, 29966603 - 29966659
Alignment:
| Q |
497 |
gtaaattgaggggagtttgcaagatttattgacttgtaatgaaaactaaatagattt |
553 |
Q |
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| T |
29966603 |
gtaaattgggggaagtttacaagatttgtttatttgtaatgaaaattaaatagattt |
29966659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 43989649 - 43989593
Alignment:
| Q |
411 |
ttcaagtaatattgtagtaagattaacgtcttcacatgaattgttgttttcgactcg |
467 |
Q |
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| T |
43989649 |
ttcaagaaagatagtagtaagattatcgtctcgacataaattgttgttttcgactcg |
43989593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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