View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8056_low_5 (Length: 353)
Name: NF8056_low_5
Description: NF8056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8056_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 139 - 335
Target Start/End: Complemental strand, 39131738 - 39131542
Alignment:
| Q |
139 |
ttcaccgtattgtttattggttttttggcatagtctttgtgaatttggaccaaacaaacatggtcttctacactcatagactcttgtttagtgaagttat |
238 |
Q |
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| T |
39131738 |
ttcaccgtattgtttattggttttttggcatagtctttgtgaatttggaccaaacaaacacggtcttctacactcatagactcttgtttagtgaagttat |
39131639 |
T |
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| Q |
239 |
taccttttggaagtctcaagtaagttgttcctcgaaaacttggtgaatacctcccattcaacaaatttagccttgtatagcatttgaagatgccttg |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39131638 |
taccttttggaagtctcaagtaagttgttcctcgaaaacttggtgaatacctcccattcaacaaatttagctttgtatagcatttgaagatgccttg |
39131542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 39131860 - 39131831
Alignment:
| Q |
17 |
tatgatgatagctattttgatccgaagtag |
46 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39131860 |
tatgatgatagctattttgatccgaagtag |
39131831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 166 - 334
Target Start/End: Original strand, 21131025 - 21131193
Alignment:
| Q |
166 |
gcatagtctttgtgaatttggaccaaacaaacatggtcttctacactcatagactcttgtttagtgaagttattaccttttggaagtctcaagtaagttg |
265 |
Q |
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| T |
21131025 |
gcatagtctttgtgaagatggaccaaagaaacatgatcttttacactcatagattcttgtttgtagaagttattaccttttgggagtctcaagtaagtta |
21131124 |
T |
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| Q |
266 |
ttcctcgaaaacttggtgaatacctcccattcaacaaatttagccttgtatagcatttgaagatgcctt |
334 |
Q |
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| T |
21131125 |
ttccttgaaaacttggtgaatacctcccattcagcaattgtatctttgtaaagcattggaagatgcctt |
21131193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 200 - 329
Target Start/End: Original strand, 18659221 - 18659350
Alignment:
| Q |
200 |
ggtcttctacactcatagactcttgtttagtgaagttattaccttttggaagtctcaagtaagttgttcctcgaaaacttggtgaatacctcccattcaa |
299 |
Q |
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||||| ||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||| ||||||||| ||||||||| || | |||||| || || |
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| T |
18659221 |
ggtctgctacactcatatactcttctttagagaagttattaccttttggaaatctcaagtatgttgttcctacaaaacttggcgagtgcctcccgtttaa |
18659320 |
T |
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| Q |
300 |
caaatttagccttgtatagcatttgaagat |
329 |
Q |
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| T |
18659321 |
caattgtagctttgtataacatttgaagat |
18659350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 21112069 - 21112229
Alignment:
| Q |
170 |
agtctttgtgaatttggaccaaacaaacatggtcttctacactcatagactcttgtttagtgaagttattaccttttggaagtctcaagtaagttgttcc |
269 |
Q |
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|||||||||||| || | ||||||||||| |||| |||||| |||||||||| |||| |||||||||||||||||||||||||||| | ||| | || |
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| T |
21112069 |
agtctttgtgaagctgaagcaaacaaacattgtctgttacacttatagactcttccttagagaagttattaccttttggaagtctcaagaatgttttgcc |
21112168 |
T |
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| Q |
270 |
tcgaaaacttggtgaatacctcccattcaacaaatttagccttgtatagcatttgaagatg |
330 |
Q |
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| T |
21112169 |
tataaaacttggggaatgcctcccatttagcaattgtagctttgtataacattggaagatg |
21112229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 209 - 326
Target Start/End: Original strand, 21123500 - 21123619
Alignment:
| Q |
209 |
cactcatagactcttgtttagtgaagttattaccttttggaagtctcaagtaagt--tgttcctcgaaaacttggtgaatacctcccattcaacaaattt |
306 |
Q |
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|||||||| |||||| ||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||| | ||||||||| ||||| | | |
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| T |
21123500 |
cactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgtgctgttcctacaaaacttggtgagtgcctcccatttaacaattgt |
21123599 |
T |
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| Q |
307 |
agccttgtatagcatttgaa |
326 |
Q |
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||| ||||||| |||||||| |
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| T |
21123600 |
agctttgtataacatttgaa |
21123619 |
T |
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