View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8056_low_9 (Length: 217)
Name: NF8056_low_9
Description: NF8056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8056_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 7161231 - 7161388
Alignment:
| Q |
42 |
taaaatctaatatcatcatttcacccggtcaccgtcattttcaatcatagatctaaaaatattcatcgaaataaagcgtctaaaactattatattgcaag |
141 |
Q |
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| T |
7161231 |
taaaatctaatatcatcatttcacccggtcatcgtcattttcaatcatagatctaaaaaaattcatcgaaataaagcgtctaaaactattatattgcaag |
7161330 |
T |
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| Q |
142 |
tcgtaggaaaatagggatgataatttagcaagccgaaggaaaataaataaatcttaag |
199 |
Q |
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| T |
7161331 |
tcgtaggaaaatagggatgataatttagcaagtcgtaggaaaataaataaatcttaag |
7161388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 7160769 - 7160803
Alignment:
| Q |
16 |
caaggatcatttcaccaacacagatataaaatcta |
50 |
Q |
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| T |
7160769 |
caaggatcatttcaccaacacagatataaaatcta |
7160803 |
T |
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