View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8057_high_10 (Length: 270)
Name: NF8057_high_10
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8057_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 39727765 - 39728016
Alignment:
| Q |
1 |
agaattctgttcaatagttacatatatagctaaatatgtaccgagaatattctaatcctaaatgggcgccaattgcatatttacaactctcccttcaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39727765 |
agaattctgttcaatagttacatatatagctaaatatgtaccgagaatattcta-tcctaaatgggcgccaattgcatatttacaactctcccttcaagc |
39727863 |
T |
|
| Q |
101 |
aatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39727864 |
aatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggtca |
39727963 |
T |
|
| Q |
201 |
ctatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39727964 |
ctatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattct |
39728016 |
T |
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