View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8057_high_15 (Length: 219)

Name: NF8057_high_15
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8057_high_15
NF8057_high_15
[»] chr4 (21 HSPs)
chr4 (13-201)||(48871068-48871256)
chr4 (13-201)||(48876372-48876560)
chr4 (13-201)||(48886754-48886942)
chr4 (23-118)||(7237125-7237219)
chr4 (48-127)||(45365620-45365699)
chr4 (13-201)||(48899248-48899436)
chr4 (13-118)||(37826358-37826463)
chr4 (19-127)||(50669664-50669772)
chr4 (43-118)||(48155818-48155893)
chr4 (44-118)||(7790665-7790739)
chr4 (48-118)||(45384290-45384360)
chr4 (54-118)||(7771980-7772044)
chr4 (43-118)||(7787085-7787160)
chr4 (51-118)||(7801228-7801295)
chr4 (51-118)||(7823560-7823627)
chr4 (68-118)||(7908887-7908937)
chr4 (43-127)||(49043566-49043647)
chr4 (51-118)||(7814068-7814135)
chr4 (43-125)||(45371466-45371548)
chr4 (171-201)||(45371600-45371630)
chr4 (94-127)||(49048001-49048034)
[»] chr5 (2 HSPs)
chr5 (13-127)||(9120345-9120462)
chr5 (19-76)||(29696872-29696929)
[»] chr8 (6 HSPs)
chr8 (13-115)||(4030153-4030255)
chr8 (19-127)||(15349471-15349576)
chr8 (13-127)||(4961886-4962000)
chr8 (160-200)||(15349392-15349432)
chr8 (71-127)||(12200915-12200971)
chr8 (71-127)||(12445343-12445399)
[»] chr1 (2 HSPs)
chr1 (44-126)||(24340994-24341076)
chr1 (44-126)||(24353359-24353441)
[»] chr2 (1 HSPs)
chr2 (13-113)||(29351018-29351118)
[»] chr6 (2 HSPs)
chr6 (54-127)||(21016403-21016476)
chr6 (13-118)||(21979010-21979113)
[»] chr7 (1 HSPs)
chr7 (47-92)||(48884460-48884505)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 48871256 - 48871068
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48871256 aagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactc 48871157  T
Q  113 tgtataaatagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatc 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871156 tgtatagatagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatc 48871068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 48876560 - 48876372
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48876560 aagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactc 48876461  T
Q  113 tgtataaatagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatc 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876460 tgtatagatagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatc 48876372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 48886942 - 48886754
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48886942 aagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactc 48886843  T
Q  113 tgtataaatagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatc 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48886842 tgtatagatagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatc 48886754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 7237125 - 7237219
Alignment:
Q  23 tgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    |||||||||||| |||| | | ||||| ||||||||||||||| ||| |||| | |||||||||||||||||||||||||||| ||||||||||||    
T  7237125 tgaaggagaatatttcacaacatcattgttcttgtttgtgtcatctt-ttaagcatgctcattgtcaccaaggagtgaaagcagagactctgtata 7237219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 45365620 - 45365699
Alignment:
Q  48 ttcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagccac 127  Q
    |||||||||||||||||| |||||||| | ||||||||||||||| | ||||| ||||||||||||||||| || |||||    
T  45365620 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtatacatggccac 45365699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 48899436 - 48899248
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| ||||| |||||||||| |||||| |||| |||||||||||| ||||| |||| ||  |||||| ||||||||||   |||||||||| |||||     
T  48899436 aagaaaatggtaaaggagaatatttcaaaacctccttcttcttgtttatgtcatcttcctatgcctgctaattgtcacca---agtgaaagcagagactt 48899340  T
Q  113 tgtataaatagccac---ggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatc 201  Q
    |||||| | | | ||   ||||||| | |||| | | |  ||||||||| || |  ||||||||| ||||||||||||||||||||||||||    
T  48899339 tgtatagacaactacttgggatccaccacatggatcctcacatttagaggaatgttctaacaactctccattgtcatcatacttcaccaatc 48899248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 37826358 - 37826463
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| |||||||||||||||| ||  || ||||||||||||||||||| ||| |||||||||| |||||   |||| || ||| |||||||| ||||||    
T  37826358 aagaaaatggtgaaggagaatattttgaaacctcattcttcttgtttgtatcatcttcttaaacttgctctccgtcaacagggaatgaaagcagagactc 37826457  T
Q  113 tgtata 118  Q
     |||||    
T  37826458 cgtata 37826463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 50669772 - 50669664
Alignment:
Q  19 atggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||| ||| || ||| || |||| | || |  |||||||||| | ||||||||||||    
T  50669772 atggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggacagcggggagtgaaagtagagactctgtata 50669673  T
Q  119 aatagccac 127  Q
     ||||||||    
T  50669672 catagccac 50669664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 48155818 - 48155893
Alignment:
Q  43 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||||||||||||||||||    |||||||  | ||| ||||||||||| |||||||||||||||||||||||||    
T  48155818 cctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtata 48155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 7790739 - 7790665
Alignment:
Q  44 ctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    |||||| || ||||||||| || |||||||| | ||||||||||||||||| |||||||||| ||| ||||||||    
T  7790739 ctcattgtttttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtata 7790665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 45384290 - 45384360
Alignment:
Q  48 ttcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    |||||||||||||||||| |||||||| | |||||||||||||||   |||||||| | ||||||||||||    
T  45384290 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccagaaagtgaaaggagagactctgtata 45384360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 7772044 - 7771980
Alignment:
Q  54 ttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||||||| || |||||||| | ||||||||||||||||| |||||||||| ||| ||||||||    
T  7772044 ttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtata 7771980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 7787160 - 7787085
Alignment:
Q  43 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||||| ||||||| ||||||| |||||||||| ||||||| ||||||   ||||||||| | ||||||||||||    
T  7787160 cctcattgttcttgtctgtgtcatcttcttaaacatgctcatcgtcaccggagagtgaaagtagagactctgtata 7787085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 7801295 - 7801228
Alignment:
Q  51 ttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||||||| ||||| |||||||||| | ||||||||| ||| |||||||||||| |||||| |||||    
T  7801295 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtata 7801228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 7823627 - 7823560
Alignment:
Q  51 ttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||||||| ||||| |||||||||| | ||||||||| ||| |||||||||||| |||||| |||||    
T  7823627 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtata 7823560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 7908937 - 7908887
Alignment:
Q  68 ttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||| |||||    
T  7908937 ttcttaaacttgctcattgtcaccagggagtgaaagcagagactcggtata 7908887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 49043566 - 49043647
Alignment:
Q  43 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagccac 127  Q
    |||||||||||||||||||||||   |||||| | || ||  | |||||  ||||||||||||||||||||||||| ||||||||    
T  49043566 cctcattcttcttgtttgtgtca---tcttaaccttgttcgctatcaccggggagtgaaagcaaagactctgtatagatagccac 49043647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 7814135 - 7814068
Alignment:
Q  51 ttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||| ||| ||||| |||||||||| | ||||||||| ||| |||||||||||| |||||| |||||    
T  7814135 ttcttttttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtata 7814068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 45371466 - 45371548
Alignment:
Q  43 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagcc 125  Q
    |||||||| |||||| |||| || |||||||| | || |||||||| | |  ||||||||||| |||||||||||| ||||||    
T  45371466 cctcattcatcttgtctgtgccatcttcttaagcttgatcattgtcgctagagagtgaaagcagagactctgtatacatagcc 45371548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 45371600 - 45371630
Alignment:
Q  171 aactgtccattgtcatcatacttcaccaatc 201  Q
    |||||||||||||||||||||||||||||||    
T  45371600 aactgtccattgtcatcatacttcaccaatc 45371630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 49048001 - 49048034
Alignment:
Q  94 ggagtgaaagcaaagactctgtataaatagccac 127  Q
    ||||||||||||||||||||||||| ||||||||    
T  49048001 ggagtgaaagcaaagactctgtatacatagccac 49048034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 9120462 - 9120345
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttctt---gtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaaga 109  Q
    ||||| |||||||||||||||| |||||| |||||||||||||   |||||||||| || ||||| | || |||||||||||| |||||||||||| |||    
T  9120462 aagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtgaaagcagaga 9120363  T
Q  110 ctctgtataaatagccac 127  Q
    ||||||||||| ||||||    
T  9120362 ctctgtataaagagccac 9120345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 29696929 - 29696872
Alignment:
Q  19 atggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaac 76  Q
    ||||||||| |||||| |||||| |||||||||||||| || ||||| ||||||||||    
T  29696929 atggtgaagaagaatacttcaaaacctcattcttcttggttctgtcatcttcttaaac 29696872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4030153 - 4030255
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| || ||||| || |||| ||||||  ||||||||||||||||| |||| |||||||| | |||||||||| |||| |||||||||||| ||||||    
T  4030153 aagaaaatagtgaaagataatacttcaaaaactcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaagcagagactc 4030252  T
Q  113 tgt 115  Q
    |||    
T  4030253 tgt 4030255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 15349576 - 15349471
Alignment:
Q  19 atggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtata 118  Q
    ||||||||||||||||| | ||| ||||||||||   ||||| |||  | |||||| |||||||||| |||||| |||||||||||| ||||||||||||    
T  15349576 atggtgaaggagaataactgaaaacctcattctt---gtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtata 15349480  T
Q  119 aatagccac 127  Q
     ||||||||    
T  15349479 catagccac 15349471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 4961886 - 4962000
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| |||||||| ||||||| |||||| ||| ||||||||| ||| ||||| |||| ||||| |||||   |||| || || ||||||||||||||||    
T  4961886 aagaaaatggtgaatgagaatatttcaaaacctgattcttcttatttatgtcatcttcataaacttgctcgaggtcaacatggggtgaaagcaaagactc 4961985  T
Q  113 tgtataaatagccac 127  Q
    |||||| || |||||    
T  4961986 tgtatacatggccac 4962000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 15349432 - 15349392
Alignment:
Q  160 aacgccctaacaactgtccattgtcatcatacttcaccaat 200  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  15349432 aacgctctaacaactgcccattgtcatcatacttcaccaat 15349392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 12200971 - 12200915
Alignment:
Q  71 ttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagccac 127  Q
    |||||||||||||   |||||| |||||||||||| |||||||||||| || |||||    
T  12200971 ttaaacctgctcacgatcaccagggagtgaaagcagagactctgtatacatcgccac 12200915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 12445399 - 12445343
Alignment:
Q  71 ttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagccac 127  Q
    |||||||||||||   |||||| |||||||||||| |||||||||||| || |||||    
T  12445399 ttaaacctgctcacgatcaccagggagtgaaagcagagactctgtatacatcgccac 12445343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 24341076 - 24340994
Alignment:
Q  44 ctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagcca 126  Q
    ||||||||||||||||||| || |||||||| | | ||||||||||| | ||||||||||||||||||| ||||| |||||||    
T  24341076 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacatagcca 24340994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 24353441 - 24353359
Alignment:
Q  44 ctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagcca 126  Q
    ||||||||||||||||||| || |||||||| | | ||||||||||| | ||||||||||||||||||| ||||| |||||||    
T  24353441 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacatagcca 24353359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 29351118 - 29351018
Alignment:
Q  13 aagaatatggtgaaggagaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactc 112  Q
    ||||| || ||||| || |||| |||| | |||||||||||||||||| |||| |||||||| | ||||||||||||||  |||||||||||| ||||||    
T  29351118 aagaaaatagtgaaagataatatttcacaacctcattcttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaagcatagactc 29351019  T
Q  113 t 113  Q
    |    
T  29351018 t 29351018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 21016476 - 21016403
Alignment:
Q  54 ttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagactctgtataaatagccac 127  Q
    |||||||||||| |||||||| | || || |||||| || ||||||||||||||||||||||||| | ||||||    
T  21016476 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagccac 21016403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 21979010 - 21979113
Alignment:
Q  13 aagaatatggtgaagga-gaataattcaaatcctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccaaggagtgaaagcaaagact 111  Q
    ||||| ||||||||||| ||||| |||||| |||||||||||   ||| |||||   |||||||| |  |||||||||||  |||||||||| | |||||    
T  21979010 aagaaaatggtgaaggaagaatatttcaaaacctcattcttccattttatgtca---tcttaaacttcatcattgtcaccggggagtgaaagtagagact 21979106  T
Q  112 ctgtata 118  Q
    |||||||    
T  21979107 ctgtata 21979113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 48884505 - 48884460
Alignment:
Q  47 attcttcttgtttgtgtcaccttcttaaacctgctcattgtcacca 92  Q
    |||||||||||||||||||  ||||||||| | |||||||||||||    
T  48884505 attcttcttgtttgtgtcattttcttaaactttctcattgtcacca 48884460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University