View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8057_high_2 (Length: 791)
Name: NF8057_high_2
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8057_high_2 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 115 - 383
Target Start/End: Original strand, 11474461 - 11474728
Alignment:
| Q |
115 |
caaactaaaaggtattgggtatacaggtgatgaacaaaaaccaaaggttcgtgcttaggataaaccaaagcatgttgttttctcctactgcatgaagaga |
214 |
Q |
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| T |
11474461 |
caaactaaaaggtattgggtatacagaagatgaacaaaaaccaaaggttcatactttagataagacaaa-aatgtagtttactcttattgcatgaaaata |
11474559 |
T |
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| Q |
215 |
ggacatgaaaagagagcatgtttaatgttaaaagcttttaagcttaagacagt-aaaaaggacaagtcctggaaaaatatctccaagaggacaatcaaga |
313 |
Q |
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| T |
11474560 |
ggacaagaaaagaaagcatgttcaatgttaaaagatttcatgcttaaaatagtgaaaaaggacaagtcctagaaaactaac-gttagagacctctcaaga |
11474658 |
T |
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| Q |
314 |
tatgggtaactaagaaagaacttgtctatgttgcagattttcttagcaacagagtcaagacaccagtcat |
383 |
Q |
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| T |
11474659 |
tatgggtacctaagaaagaaatcgtttatgttgcatattcgattagaaataaagtcaagacaccaatcat |
11474728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 476 - 630
Target Start/End: Original strand, 11476185 - 11476339
Alignment:
| Q |
476 |
ggaggaaaccagaaaggaaggataattgactcgagaactattggtaattcttatttctcttctattcataatgtttggttaatagatgggcttaaacata |
575 |
Q |
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| T |
11476185 |
ggagaaaaccaaaaagggaagatcattggctcaaaaactattggtaattcctcttttccttctattcataatgtttggttagtagatgaagttaaacata |
11476284 |
T |
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| Q |
576 |
acttactgagcataattgaattttgtaacagtggttatggtgttgtatttaataa |
630 |
Q |
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| T |
11476285 |
acataccaaacataagtcagttgtgtgatagtggttatgatgttgtgtttaataa |
11476339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 14424263 - 14424219
Alignment:
| Q |
186 |
atgttgttttctcctactgcatgaagagaggacatgaaaagagag |
230 |
Q |
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| T |
14424263 |
atgttgtttgctcctactgcatgaagagaggacatgaaaagagag |
14424219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0999 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 3095 - 3034
Alignment:
| Q |
200 |
tactgcatgaagagaggacatgaaaagagagcatgtttaatgttaaaagcttttaagcttaa |
261 |
Q |
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| T |
3095 |
tactgcatgaagagaggacatgacaagaaagtttgttcaatgttaaaagctatcaagcttaa |
3034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23212970 - 23213027
Alignment:
| Q |
18 |
aatcacgatgaagctaaacctaaagccaggtccatagtgcttaaatccaaaggcaaaa |
75 |
Q |
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| T |
23212970 |
aatcatgatgaggctaaacctaaatccaagtctataatgctcaaatccaaaggcaaaa |
23213027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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