View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8057_high_5 (Length: 532)
Name: NF8057_high_5
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8057_high_5 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0756 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 9875883 - 9875367
Alignment:
| Q |
16 |
aaatttgtgttatgaaggtgttcacagacaatatggggaagaagtctgatccagtgataaccaaatgtaaagctaatgagaactggaccaaggtgacctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9875883 |
aaatttgtgttatgaaggtgttcacagacaatatggggaagaagtctgatccagtgataaccaaatgtaaagctaatgagaactggaccaaggtgacctt |
9875784 |
T |
|
| Q |
116 |
taagcctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatggcagggtgccttggaaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9875783 |
taagcctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatggcagggtgccttggaaag |
9875684 |
T |
|
| Q |
216 |
actgttaaggttgaactcaacggcacagtgattcgttttaagtctttcaaagattatgctgagctcttcctgaaatgtgctgagaagtccaaacccagtc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9875683 |
actgttaaggttgaactcaacggcacagtgattcgttttaagtctttcaaagattatgctgagctcttcctgaaatgtgctgagaagtccaaacccagtc |
9875584 |
T |
|
| Q |
316 |
ccctgccaaggtttgttgctatagagatatgtagttgagaactcaatctgcgtttgggttggtgttcctttgtttttatctgacatgacttgggttctgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9875583 |
ccctgccaaggtttgttgctatagagatatgtagttgagaactcaatctgcgtttgggttggtgttcctttgtttttatctgacatgacttgggttctgt |
9875484 |
T |
|
| Q |
416 |
ttttaggactcataccaaagtaggtgataggtgggagatttgcgtgagtctaagtgatgggcagtttcaacaggtgactagtgaacttcttaagtattgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9875483 |
ttttaggactcataccaaagtaggtgataggtgggagatttgcgtgagtctaagtgatgggcagtttcaacaggtgactagtgaacttcttaagtattgt |
9875384 |
T |
|
| Q |
516 |
gtaacttgcaggttcat |
532 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9875383 |
gtaacttgcaggttcat |
9875367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 38840739 - 38840431
Alignment:
| Q |
20 |
ttgtgttatgaaggtgttcacagacaatatggggaagaagtctgatccagtgataaccaaatgtaaagctaatgagaactggaccaaggtgacctttaag |
119 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||| |||||||| |||||||||||| |||| || |||| |||||||||||| ||||| ||||||||| |
|
|
| T |
38840739 |
ttgtgttatgaaggttttctcaaacaatatggggacaaagtctgagccagtgataaccgaatgcaatgctagtgagaactggacaaaggtaacctttaag |
38840640 |
T |
|
| Q |
120 |
cctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatggcagggtgccttggaaagactg |
219 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38840639 |
cctgacttggaaaagttcaaaatgacatatcttgaagaggaccttgttgctttgatgaagaagcgtgtgttggatatggcagggtgccttggaaagactg |
38840540 |
T |
|
| Q |
220 |
ttaaggttgaactcaacggcacagtgattcgttttaagtctttcaaagattatgctgagctcttcctgaaatgtgctgagaagtccaaacccagtcccct |
319 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38840539 |
ttaaggttgaactcaatggcaccttgatctgttttatgtctttccgcgattatgttgacctcttcctgaaatgtgctgagaagtccaaacctgcacccct |
38840440 |
T |
|
| Q |
320 |
gccaaggtt |
328 |
Q |
| |
|
||||||||| |
|
|
| T |
38840439 |
gccaaggtt |
38840431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 512
Target Start/End: Complemental strand, 38840363 - 38840264
Alignment:
| Q |
413 |
tgtttttaggactcataccaaagtaggtgataggtgggagatttgcgtgagtctaagtgatgggcagtttcaacaggtgactagtgaacttcttaagtat |
512 |
Q |
| |
|
|||| |||||| |||| | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38840363 |
tgttattaggattcatgctatagtaggtgataggtgggagatttgcgtgagtctaagtgatggccagtttcaacaggtgactagtgaacttctcaagtat |
38840264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 101 - 529
Target Start/End: Original strand, 20098355 - 20098790
Alignment:
| Q |
101 |
gaccaaggtgacctttaagcctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatggca |
200 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20098355 |
gaccatggtgacctttaagcctgacttaaccaagtttgaaatgacctgtcttgaagaggacgttgtagctttgatgaaaaagcgtgtgctggacatggca |
20098454 |
T |
|
| Q |
201 |
gggtgccttggaaagactgttaaggttgaactcaacggcacagtgattcgttttaagtctttcaaagattatgctgagctcttcctgaaatgtgctgaga |
300 |
Q |
| |
|
||||||||||| | ||||||| ||||||||| | | || |||||||| || || |||||||||| ||||||||| ||||| |||| |||||| || |
|
|
| T |
20098455 |
gggtgccttggtgatactgttacggttgaactaatcagcgaagtgattccattcaactctttcaaaggttatgctgatttcttcttgaattgtgctcagg |
20098554 |
T |
|
| Q |
301 |
agtccaaacccagtcccctgccaaggtttg---ttgctatagagatatgtagttgagaactcaatctgcgtttgggttggtg----ttcctttgttttta |
393 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
20098555 |
agtccacaccctttcccctgccaaggtttgttattgctaaacagatatgtagttgagaactcaatctgcgtgtgggttggtgtattttcctttgttttta |
20098654 |
T |
|
| Q |
394 |
tctgacatgacttgggttctgtttttaggactcataccaaagtaggtgataggtgggagatttgcgtgagtctaagtgatgggcagtttcaacaggtgac |
493 |
Q |
| |
|
||| |||||| |||| | || || ||||||||||| ||||| || ||||||| | |||||||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
20098655 |
tctaacatgatttggttgcttttattaggactcatgccaaactaagtgatagcttggagatttgcctgagtctaagtgacgggaagtttcaacaggtgac |
20098754 |
T |
|
| Q |
494 |
tagtgaacttcttaagtattgtgtaacttgcaggtt |
529 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
20098755 |
tagtgaacgtctatagtatagtgtaacttgcaggtt |
20098790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 99 - 494
Target Start/End: Complemental strand, 33371952 - 33371561
Alignment:
| Q |
99 |
tggaccaaggtgacctttaagcctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatgg |
198 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||||| | |||| |||||||| |||||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
33371952 |
tggaccaatgtgatgtttaagcctgacttggataagtttgatatgaagaatcttgaaaaggacgttatagctttgatgaaaaagcgtgtgttggacatgg |
33371853 |
T |
|
| Q |
199 |
cagggtgccttggaaagactgttaaggttgaactcaacggcacagtgattcgttttaagtctttcaaagattatgctgagctcttcctgaaatgtgctga |
298 |
Q |
| |
|
||| ||||||||| ||||||||| ||||| |||||||||||| ||||||| | |||||||| |||||||||||| | ||||| || | ||||| |
|
|
| T |
33371852 |
cagtgtgccttggtgagactgttacggttgtactcaacggcactgtgattccagtcaagtcttttaaagattatgctaatttcttcttggatcgtgct-- |
33371755 |
T |
|
| Q |
299 |
gaagtccaaacccagtcccctgccaaggtttgttgctatagagatatgtagttgagaactcaatctgcgtttgggttggtgt----tcctttgtttttat |
394 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33371754 |
-------aaaccctttcccctgccaaggtttgttgctataccgatatgtagttgagaactcaatctgcgtgtgggttggtgtattttcctttgtttttat |
33371662 |
T |
|
| Q |
395 |
ctga-catgacttgggttctgtttttaggactcataccaaagtaggtgataggtgggagatttgcgtgagtctaagtgatgggcagtttcaacaggtgac |
493 |
Q |
| |
|
|| | ||||| |||| | ||||| ||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
33371661 |
cttaacatgatttggttgctgttattaggactcatgccaaattaggtgataggttggagatttgcctgagtctaagtgacgggaagtttcaacaggtgac |
33371562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 101 - 344
Target Start/End: Complemental strand, 3904 - 3661
Alignment:
| Q |
101 |
gaccaaggtgacctttaagcctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatggca |
200 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
3904 |
gaccacggtgacctttaagcctgacttaaccaagtttcagatgacctgtcttgaagaggacgttgtagctttgatgaaaaagcgtgtgctggatatggca |
3805 |
T |
|
| Q |
201 |
gggtgccttggaaagactgttaaggttgaactcaacggcacagtgattcgttttaagtctttcaaagattatgctgagctcttcctgaaatgtgctgaga |
300 |
Q |
| |
|
||||||||||| | ||||||| ||||||||| | |||| |||||||| || ||||||||||||| ||||||||| |||| |||| |||||| || |
|
|
| T |
3804 |
gggtgccttggtgatactgttacggttgaactaatcggcgaagtgattccattcaagtctttcaaaggttatgctgatttcttgttgaattgtgctcagg |
3705 |
T |
|
| Q |
301 |
agtccaaacccagtcccctgccaaggtttgttgctatagagata |
344 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
3704 |
agtccaaaccctttcccctgccaaggtttgttgctatacagata |
3661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 343 - 532
Target Start/End: Complemental strand, 3515 - 3322
Alignment:
| Q |
343 |
tatgtagttgagaactcaatctgcgtttgggttggtgt----tcctttgtttttatctgacatgacttgggttctgtttttaggactcataccaaagtag |
438 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||| | || || ||||||||||| |||| || |
|
|
| T |
3515 |
tatgtagttgagaactcaatctgcgtgtgggttggtgtattttcctttgtttttatctaacatgatttggttgcttttattaggactcatgtcaaactaa |
3416 |
T |
|
| Q |
439 |
gtgataggtgggagatttgcgtgagtctaagtgatgggcagtttcaacaggtgactagtgaacttcttaagtattgtgtaacttgcaggttcat |
532 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||| ||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
3415 |
gtgatagcttggagatttgcctgagtctaagtgacgggaagtttcaacaggtgactagtgaacgtcgaaagtatagtgtaacttgcaggttcat |
3322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 12157587 - 12157456
Alignment:
| Q |
99 |
tggaccaaggtgacctttaagcctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatgg |
198 |
Q |
| |
|
||||||||||||| | |||||| ||| ||| ||| |||||| |||| | | ||||||| || |||||||||| ||||| ||| ||||| |||||||| |
|
|
| T |
12157587 |
tggaccaaggtgatcgttaagcttgatttgaagatgtttaacatgaaatgttttgaagataacattgttgctttaatgaagaagtgtgtggtggacatga |
12157488 |
T |
|
| Q |
199 |
cagggtgccttggaaagactgttaaggttgaa |
230 |
Q |
| |
|
||||| ||| |||| ||| ||||||||||| |
|
|
| T |
12157487 |
cagggatcctcggaaggacgattaaggttgaa |
12157456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University