View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8057_low_1 (Length: 909)

Name: NF8057_low_1
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8057_low_1
NF8057_low_1
[»] chr2 (10 HSPs)
chr2 (50-892)||(33413610-33414453)
chr2 (536-844)||(28027943-28028227)
chr2 (723-842)||(13109068-13109186)
chr2 (359-468)||(13549868-13549977)
chr2 (426-475)||(43627236-43627285)
chr2 (426-468)||(45421262-45421304)
chr2 (620-696)||(4659641-4659716)
chr2 (617-692)||(5188291-5188366)
chr2 (426-476)||(9949618-9949668)
chr2 (438-475)||(33547609-33547646)
[»] chr8 (7 HSPs)
chr8 (536-842)||(43041180-43041481)
chr8 (597-842)||(43039349-43039589)
chr8 (536-843)||(14196671-14196979)
chr8 (215-278)||(40439745-40439808)
chr8 (426-476)||(2871926-2871976)
chr8 (426-476)||(7452088-7452138)
chr8 (536-568)||(43039325-43039357)
[»] chr7 (8 HSPs)
chr7 (536-842)||(37747678-37747987)
chr7 (536-842)||(37749243-37749543)
chr7 (570-664)||(45809774-45809872)
chr7 (605-672)||(33829589-33829656)
chr7 (426-468)||(15654059-15654101)
chr7 (438-475)||(13439790-13439827)
chr7 (426-475)||(28327093-28327142)
chr7 (426-475)||(30385937-30385986)
[»] chr6 (7 HSPs)
chr6 (276-535)||(14528050-14528309)
chr6 (276-533)||(14532778-14533035)
chr6 (536-661)||(31798781-31798913)
chr6 (379-468)||(4406756-4406845)
chr6 (720-805)||(34391113-34391199)
chr6 (720-804)||(34486361-34486445)
chr6 (426-468)||(1682790-1682832)
[»] chr1 (12 HSPs)
chr1 (536-842)||(38206827-38207133)
chr1 (615-842)||(3585452-3585672)
chr1 (570-674)||(929847-929951)
chr1 (536-617)||(31477944-31478025)
chr1 (570-664)||(7493580-7493674)
chr1 (536-606)||(3584475-3584545)
chr1 (430-476)||(47116024-47116070)
chr1 (426-468)||(36305528-36305570)
chr1 (226-283)||(12967297-12967354)
chr1 (438-475)||(32353663-32353700)
chr1 (426-475)||(38231424-38231473)
chr1 (438-475)||(48073798-48073835)
[»] chr4 (10 HSPs)
chr4 (536-799)||(53611218-53611450)
chr4 (426-476)||(3130333-3130383)
chr4 (622-696)||(29298553-29298626)
chr4 (426-468)||(7663592-7663634)
chr4 (131-162)||(51203233-51203264)
chr4 (215-265)||(31063631-31063681)
chr4 (426-468)||(47540669-47540711)
chr4 (426-475)||(20673446-20673495)
chr4 (438-475)||(23873842-23873879)
chr4 (438-475)||(55298360-55298397)
[»] chr5 (5 HSPs)
chr5 (367-476)||(31862329-31862438)
chr5 (570-606)||(6600746-6600782)
chr5 (426-466)||(10487260-10487300)
chr5 (426-476)||(34480692-34480742)
chr5 (438-475)||(34858059-34858096)
[»] chr3 (8 HSPs)
chr3 (601-693)||(4809991-4810081)
chr3 (426-475)||(7146778-7146827)
chr3 (426-468)||(30167699-30167741)
chr3 (359-475)||(2813787-2813903)
chr3 (736-805)||(496582-496648)
chr3 (796-842)||(54017245-54017291)
chr3 (426-467)||(9378842-9378883)
chr3 (438-475)||(23601510-23601547)
[»] scaffold0330 (1 HSPs)
scaffold0330 (734-801)||(17063-17130)
[»] scaffold0240 (1 HSPs)
scaffold0240 (734-801)||(1081-1148)
[»] scaffold0418 (1 HSPs)
scaffold0418 (426-468)||(7419-7461)


Alignment Details
Target: chr2 (Bit Score: 617; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 50 - 892
Target Start/End: Complemental strand, 33414453 - 33413610
Alignment:
Q  50 ctattatgaattcacagtacaataaactacttcattccttataaatataatgtatttgaaactgaaggttataaattatgattttcgtccctataaatat 149  Q
    |||||||||||||| || || |||||||||||||||| |||||||||||  | ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  33414453 ctattatgaattcataggacgataaactacttcattcgttataaatatagcgaatttgaaactgaaggttttaaattatgatattcgtccctataaatat 33414354  T
Q  150 tgcgaattttgatctatatttatagcgaattttttcatctctatattttaaaatatatttaattcttctgttaatctatgttttctataccattagtgaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  33414353 tgcgaattttgatctatatttatagcgaattttttcatctctatattttaacatatatttaactcttcttttaatctatgttttctataccattagtgaa 33414254  T
Q  250 agatattattgtaaaacaaatcacaattattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtgga 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  33414253 agatattattgtaaaacaaatcacaattattattatcgtgcactacctttgctactctatggtcgttagtgcgggactagattggtttttcggcggtgga 33414154  T
Q  350 ctcccaaattatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcc 449  Q
    |||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |     
T  33414153 ctcccagattatttccgatcatttcttgtagttttcacatttgacaagtagtgggaaagctcagcgctcgtttctacaacttatatggcttatttgtaca 33414054  T
Q  450 tgggttgtgtggaatgaacataataatatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatatttttgaagtataattc 549  Q
    ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  33414053 tggattgtgtggaatgaacataataatatcttattcaataattctgaaacccaaattccccggttgttggataaagttaaatattgttgaagtataattc 33413954  T
Q  550 atattctaatgttagttagctgtggataaatccaactatatttgttg--------gttagttagtaactaactagttagttagtttgttagtggcttgta 641  Q
    |||||||||  |||||||| | ||||||||||||||||| |||||||        ||||||||||||||||||||||||| |||| ||||||||||||||    
T  33413953 atattctaa--ttagttagttatggataaatccaactatgtttgttggttaattagttagttagtaactaactagttagtcagttagttagtggcttgta 33413856  T
Q  642 gtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcatattcaat 740  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||      |||||||||| ||||||||||||| |||||||||||    
T  33413855 gtgcaagttattcaacttaacctataagtacttagcttttgtattcagttgatacaga------ttgtatagcacacatctcatatctctcatattcaat 33413762  T
Q  741 aatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatgttctat 840  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33413761 aatagaagaattttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctcaattatgtatgtgcatgttctat 33413662  T
Q  841 caaatatatgtccttagggtggttgaaagccacttttgtgtttggtactcat 892  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33413661 caaatatatgtccttagggtggttgaaagccacttttgtgtttagtactcat 33413610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 536 - 844
Target Start/End: Original strand, 28027943 - 28028227
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg 635  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||                   |||||||||||||    
T  28027943 ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgcttgttggttagtt-------------------agtttgttagtgg 28028023  T
Q  636 cttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata 734  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      |||| ||||||||||||| |||||    
T  28028024 cttgtagtgcaagttactcaacttagcctataagtacttagcttttgtattcagttgatatagattgtat------agcacacatctcatatctctcata 28028117  T
Q  735 ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatg 834  Q
    ||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  28028118 ttcaataatagaagagttttatcattcttttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatg 28028217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 723 - 842
Target Start/End: Complemental strand, 13109186 - 13109068
Alignment:
Q  723 atatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattctattctttctctaaatt 821  Q
    |||||| ||||||||||||||| ||||| |||||||||| |||||||||| ||||| | ||||||||| ||| |||||||||||   |||||||| ||||    
T  13109186 atatctctcatattcaataata-aagagatttatcattcatttgtagttttctctctaaagtgtgagtatgt-gagatcattcttaactttctctcaatt 13109089  T
Q  822 atgtatgtgcatgttctatca 842  Q
     | ||||||||||||||||||    
T  13109088 ctatatgtgcatgttctatca 13109068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 13549977 - 13549868
Alignment:
Q  359 tatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtg 458  Q
    ||||||| ||||||| || |||||||| ||||||||| || ||||    |||  ||| || ||| | |||||||| || |||||||||||||||||||||    
T  13549977 tatttccgatcattttttacagtttactcatttgacaggtggtggtgttgctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtg 13549878  T
Q  459 tggaatgaac 468  Q
    ||||||||||    
T  13549877 tggaatgaac 13549868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 43627285 - 43627236
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  43627285 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataa 43627236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 45421304 - 45421262
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  45421304 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 45421262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 696
Target Start/End: Original strand, 4659641 - 4659716
Alignment:
Q  620 gttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata 696  Q
    ||||||| ||||||| | |||||||||||| |||| ||||||||||||| ||||| | |||||||||| | ||||||    
T  4659641 gttagttagttagtgacctgtagtgcaagtaactctacttagcctataaatactt-gttttgtattcaatagatata 4659716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 692
Target Start/End: Original strand, 5188291 - 5188366
Alignment:
Q  617 ttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttga 692  Q
    |||||||||| ||| ||| |||||||||||||||||   ||||||||||||| || |||| |||||| ||| ||||    
T  5188291 ttagttagttagtttgtgacttgtagtgcaagttacaacacttagcctataaataattagttttgtaatcaattga 5188366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 9949618 - 9949668
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 476  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| |||||||    
T  9949618 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataat 9949668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Complemental strand, 33547646 - 33547609
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  33547646 cttctttgtgcctgggttgtttggaatgaacgtaataa 33547609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 536 - 842
Target Start/End: Original strand, 43041180 - 43041481
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg 635  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  43041180 ttgaagtataattcatattctaatgttagttagttatggatagatccaactatgcttgttggttagttagtaactaactagttagttagtttgttagtgg 43041279  T
Q  636 cttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata 734  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      |||||||||| ||||||||||||| |||||    
T  43041280 cttgtagtgcaagttactcaacttagcctataagtacttagcttttgtattcagttgatataga------ttgtatagcacacatctcatatctctcata 43041373  T
Q  735 ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatg 834  Q
    ||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  43041374 ttcaataatagaagagttttatcattcttttgtagtttcctctataagtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatg 43041473  T
Q  835 ttctatca 842  Q
    ||||||||    
T  43041474 ttctatca 43041481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 597 - 842
Target Start/End: Original strand, 43039349 - 43039589
Alignment:
Q  597 gttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatat 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  43039349 gttagttagtaactaactagttagttagtttgttagtggcttgtattgcaagttactcaacttagcctataagtacttatcttttgtattcagttgatat 43039448  T
Q  696 agattgtatttgtatagcagacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtag 795  Q
    |||||||||      |||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||  | |||||||||||||    
T  43039449 agattgtat------agcacacatctcatatctctcatattcaatgatagaagagttttatcattcttttgtagtttcctctctaaatgtgagtgtgtag 43039542  T
Q  796 agatcattctattctttctctaaattatgtatgtgcatgttctatca 842  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||    
T  43039543 agatcattctaatatttctctcaattatgtatgtgcatgttctatca 43039589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 536 - 843
Target Start/End: Original strand, 14196671 - 14196979
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagtt--------agtaactaactagttagttagttt 627  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||    
T  14196671 ttgaagtataattcatattctaatgttagttagtataggataaatccaactatgtttgttggttagttggttagtaagtaactaactagttagttagttt 14196770  T
Q  628 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat-atagattgtatttgtatagcagacatctcatat 726  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||| |   ||||||||| || ||| | |||||||||      |||  |||||||||||    
T  14196771 gttagaggcttgtagtgcaagttattcaacttatcctataagtacatg--tttgtattctgtagattacagattgtat------agctcacatctcatat 14196862  T
Q  727 ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta 826  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||| | ||||||| |||||||||    
T  14196863 ctctcatattcaataatagaagagttttatcatttctttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatttttctctcaattatgta 14196962  T
Q  827 tgtgcatgttctatcaa 843  Q
    |||||||||||||||||    
T  14196963 tgtgcatgttctatcaa 14196979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 40439808 - 40439745
Alignment:
Q  215 ttctgttaatctatgttttctataccattagtgaaagatattattgtaaaacaaatcacaatta 278  Q
    |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||||| |||||||||    
T  40439808 ttcttttaatttatgttttccataccattagtgaaggatatttttgtaaaacaactcacaatta 40439745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 2871976 - 2871926
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 476  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  2871976 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataat 2871926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 7452138 - 7452088
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 476  Q
    ||||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  7452138 caacttatatggctactttgtgactgggttgtgtggaatgaacaaaataat 7452088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 43039325 - 43039357
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttag 568  Q
    |||||||||||||||||||||||||||||||||    
T  43039325 ttgaagtataattcatattctaatgttagttag 43039357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 1e-96; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 536 - 842
Target Start/End: Complemental strand, 37747987 - 37747678
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagt--------aactaactagttagttagttt 627  Q
    ||||||||||||||||||||| |||||||||||  | |||||||||||||||| ||| |||||||||||||        |||||| ||||| ||||||||    
T  37747987 ttgaagtataattcatattctgatgttagttagtagaggataaatccaactatgtttattggttagttagttagtaagtaactaattagttggttagttt 37747888  T
Q  628 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcatat 726  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||      |||| ||||||||||     
T  37747887 gttagtggcttgtagtgcaagttactcaacttagcctataaatacttggcttttgtattcagttgatatagattgtat------agcaaacatctcatac 37747794  T
Q  727 ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta 826  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||  ||||||||    
T  37747793 ctctcatattcaataatagaagagttttatcattcctctgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttctctcgattatgta 37747694  T
Q  827 tgtgcatgttctatca 842  Q
    ||||||||||||||||    
T  37747693 tgtgcatgttctatca 37747678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 536 - 842
Target Start/End: Complemental strand, 37749543 - 37749243
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagtta--------gtaactaactagttagttagttt 627  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||        |||||||||||||||||||||||    
T  37749543 ttgaagtataattcatattctaatgttagttagtagaggataaatccaactatgtttgttggttagttagttagtaagtaactaactagttagttagttt 37749444  T
Q  628 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatat 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||      |||||||||| |||||          
T  37749443 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttaacttttgtattcagttgatataga------ttgtatagcacacatc------ 37749356  T
Q  727 ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta 826  Q
       ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||| |||||||||    
T  37749355 ---tcatattcaataatagaagagttttatcattcctttgtagttttctctctaagtgtgagtgtgtagagatcattctaatctttctctcaattatgta 37749259  T
Q  827 tgtgcatgttctatca 842  Q
    ||||||||||||||||    
T  37749258 tgtgcatgttctatca 37749243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 570 - 664
Target Start/End: Complemental strand, 45809872 - 45809774
Alignment:
Q  570 tgtggataaatccaactatatttgttggttagtta----gtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcct 664  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  45809872 tgtggataaatccaactatgtttgttggttagttacttggtaactaactcgttagttagttagttagaggcttgtagtgcaagttactcaacttagcct 45809774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 605 - 672
Target Start/End: Original strand, 33829589 - 33829656
Alignment:
Q  605 gtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtac 672  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33829589 gtaactaactagttagttagtttgttagtagcttgtagtgcaagttactcaacttagcctataagtac 33829656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 15654059 - 15654101
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    ||||||||||| ||||||||||| || ||||||||||||||||    
T  15654059 caacttatatggcttctttgtgcatgagttgtgtggaatgaac 15654101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Complemental strand, 13439827 - 13439790
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  13439827 cttctttgtgcctgggttgtttggaatgaacgtaataa 13439790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 28327142 - 28327093
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||| || ||||||||||| |||||||| |||||||||| ||||||    
T  28327142 caacttatttggcttctttgtgcttgggttgtttggaatgaacgtaataa 28327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 30385986 - 30385937
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| ||||||    
T  30385986 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataa 30385937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 5e-80; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 276 - 535
Target Start/End: Complemental strand, 14528309 - 14528050
Alignment:
Q  276 ttattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtggactcccaaattatttccaatcatttct 375  Q
    ||||||||||| ||||||||||||||||||||| ||  |||||||| ||||||||||| ||||||| | |||||||| || ||||||||| |||||||||    
T  14528309 ttattattatcatgcactacctttgctactctacggcagttagtgcaggactggattgacttttcgtcagtggactctcagattatttccgatcatttct 14528210  T
Q  376 tgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    || |||||||||||| |||| |||||||||||||||||||||| ||||||||  ||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  14528209 tgtagtttacacattcgacaggtagtgggaaagctcaacgctcatttctacagtttatatggcttctttgtgccttggttgtgtggaatgaacgtaataa 14528110  T
Q  476 tatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatattt 535  Q
    |||||||||||||||||  | |||||  |||||||| ||||||||||| |||||||||||    
T  14528109 tatattattcaataattcagcaacccccattccccggttgttggataacgttaaatattt 14528050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 276 - 533
Target Start/End: Complemental strand, 14533035 - 14532778
Alignment:
Q  276 ttattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtggactcccaaattatttccaatcatttct 375  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||  |||||||||| || ||||||||| ||| |||||    
T  14533035 ttattattatcgtgcactacctttgctactctatggcagttagtgcaggactggattgacttttcatcggtggactctcagattatttccgatcctttct 14532936  T
Q  376 tgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    || |||||| | ||| |||| ||| |||||||| || |||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  14532935 tgtagtttatatattcgacaggtaatgggaaaggtcgacgctcatttctacagattatatgacttctttgtgccttggttgtgtggaatgaacgtaataa 14532836  T
Q  476 tatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatat 533  Q
    |||  ||||||| ||||  | |||||  |||||||| ||||||||||| |||| ||||    
T  14532835 tatgctattcaaaaattccgcaacccccattccccggttgttggataaggttatatat 14532778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 536 - 661
Target Start/End: Original strand, 31798781 - 31798913
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttag--------taactaactagttagttagttt 627  Q
    |||||||||||||||||||||||| ||||| |  ||||||||||| ||||||| ||||||||||||||||        ||||||||||||||||| ||||    
T  31798781 ttgaagtataattcatattctaatattagtaat-tgtggataaattcaactatgtttgttggttagttagttatttagtaactaactagttagtttgttt 31798879  T
Q  628 gttagtggcttgtagtgcaagttactcaacttag 661  Q
    ||||||||||||||||||||||||||||| ||||    
T  31798880 gttagtggcttgtagtgcaagttactcaatttag 31798913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 379 - 468
Target Start/End: Complemental strand, 4406845 - 4406756
Alignment:
Q  379 agtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    ||||||| ||| ||| | || |||| ||||||  ||| |||||||| || || |||||||||||||||||||||||||||||||||||||    
T  4406845 agtttactcatatgataggtggtggtaaagctagacgttcgtttctgcagctaatatgacttctttgtgcctgggttgtgtggaatgaac 4406756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 720 - 805
Target Start/End: Original strand, 34391113 - 34391199
Alignment:
Q  720 ctcatatctttcatattcaataatagaagagtttt-atcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattct 805  Q
    ||||||||| ||| ||||||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||||||| | |||||||||    
T  34391113 ctcatatctctcacattcaataata-aagtgtttttatcattcctttgtagtttcctctctaaagtgtgagtgtgtggcgatcattct 34391199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 720 - 804
Target Start/End: Complemental strand, 34486445 - 34486361
Alignment:
Q  720 ctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctc-tcatagtgtgagtgtgtagagatcattc 804  Q
    ||||||||| ||| ||| ||||||| |||||||||||||||| |||||||||||||| | | | ||||||||||| ||||||||||    
T  34486445 ctcatatctctcacatttaataata-aagagttttatcattcttttgtagtttcctctttaaaatgtgagtgtgtggagatcattc 34486361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 1682832 - 1682790
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    |||||||| || ||||| |||||||||||||||||||||||||    
T  1682832 caacttatttggcttctctgtgcctgggttgtgtggaatgaac 1682790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 3e-69; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 536 - 842
Target Start/End: Original strand, 38206827 - 38207133
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggtta----gttagtaactaactagttagttagtttgtta 631  Q
    ||||||||||||| |||||||||||||||||||  | |||||||| ||||||| |||||||||||    |||||||||||||||||||||||||||||||    
T  38206827 ttgaagtataattaatattctaatgttagttagtagaggataaattcaactatgtttgttggttagttagttagtaactaactagttagttagtttgtta 38206926  T
Q  632 gtggcttgtagtgcaagttactcaacttagcct---ataagtacttagctttgtattcagttga-tatagattgtatttgtatagcagacatctcatatc 727  Q
    | ||||||||||||||||||||||||||||| |   ||||||||  |  |||||||||||| || || |||      ||||||| || ||||||  ||||    
T  38206927 gaggcttgtagtgcaagttactcaacttagcttataataagtac--atgtttgtattcagtagattacaga------ttgtataacacacatcttgtatc 38207018  T
Q  728 tttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtat 827  Q
    | |||||||||||||||||||||||||||||||||||| |||||| |||||  | ||| | |||||||||||||||||| ||||||||| ||||||| ||    
T  38207019 tctcatattcaataatagaagagttttatcattcctttatagttttctctctaaatgtaaatgtgtagagatcattctaatctttctcttaattatgcat 38207118  T
Q  828 gtgcatgttctatca 842  Q
    |||||||||||||||    
T  38207119 gtgcatgttctatca 38207133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 615 - 842
Target Start/End: Original strand, 3585452 - 3585672
Alignment:
Q  615 agttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat-atagattgtatttgtatagc 713  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |   |||||||| ||| ||| | |||||||||      |||    
T  3585452 agttagttagtttgttagaggcttgtagtgcaagttactcaacttagcctatacgtacatg--tttgtattaagtagattacagattgtat------agc 3585543  T
Q  714 agacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttc 813  Q
    | ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  3585544 acacatctcatatctcttatattcaataacagaagagttttatcattcctttgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttc 3585643  T
Q  814 tctaaattatgtatgtgcatgttctatca 842  Q
    ||| |||||||||| ||||||||||||||    
T  3585644 tctcaattatgtatatgcatgttctatca 3585672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 570 - 674
Target Start/End: Original strand, 929847 - 929951
Alignment:
Q  570 tgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataag 669  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  929847 tgtggataaatccaattatgtttgttagttagttagtaactaactagttagttagtttgtttgtggcttgtagtgcaagaaactccacttagcctataag 929946  T
Q  670 tactt 674  Q
    |||||    
T  929947 tactt 929951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 31477944 - 31478025
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagt 617  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31477944 ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggttagttagtaaccaactagt 31478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 570 - 664
Target Start/End: Original strand, 7493580 - 7493674
Alignment:
Q  570 tgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcct 664  Q
    ||||||||||| ||||||| ||||||||||||||| | | ||||||  ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  7493580 tgtggataaattcaactatgtttgttggttagttacttagtaactaactagttagttagttagaggcttgtagtgcaagttactcaacttagcct 7493674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 536 - 606
Target Start/End: Original strand, 3584475 - 3584545
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagt 606  Q
    ||||||||||||||||||||||||||||||| |  | |||||||| ||||||| |||||||||||||||||    
T  3584475 ttgaagtataattcatattctaatgttagtttgtagaggataaattcaactatgtttgttggttagttagt 3584545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 47116070 - 47116024
Alignment:
Q  430 ttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 476  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  47116070 ttatatgacttttttgtgcctgagttgtgtggaatgaacaaaataat 47116024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 36305570 - 36305528
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    ||||||||||| || ||||||| ||||||||||||||||||||    
T  36305570 caacttatatggctactttgtgtctgggttgtgtggaatgaac 36305528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 12967297 - 12967354
Alignment:
Q  226 tatgttttctataccattagtgaaagatattattgtaaaacaaatcacaattattatt 283  Q
    ||||||||| ||||||||| | || |||||| ||||||||||| ||||||||| ||||    
T  12967297 tatgttttccataccattaataaaggatatttttgtaaaacaactcacaattaatatt 12967354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 32353663 - 32353700
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  32353663 cttctttgtgcctgggttgtttggaatgaacgtaataa 32353700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 38231473 - 38231424
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    ||||| ||||||||||| |||||||| ||||| |||||||||| ||||||    
T  38231473 caactaatatgacttctatgtgcctgagttgtttggaatgaacgtaataa 38231424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 48073798 - 48073835
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  48073798 cttctttgtgcctgggttgtttggaatgaacgtaataa 48073835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 536 - 799
Target Start/End: Original strand, 53611218 - 53611450
Alignment:
Q  536 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg 635  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||               ||||||||||||| |||||||     
T  53611218 ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggt---------------tagttagttagttggttagtga 53611302  T
Q  636 cttgtagtgcaagttactcaacttagcctataagtacttag-ctttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata 734  Q
    |||||||||||||| |||| ||||||||||| |||||||||  ||||| |||||||              ||  ||| || |   ||||||||| ||| |    
T  53611303 cttgtagtgcaagtaactccacttagcctatgagtacttagtttttgtgttcagtt-------------ctttaatatcaca---ctcatatctctcaaa 53611386  T
Q  735 ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagat 799  Q
    |||||||||| |||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  53611387 ttcaataata-aagagttttatcattcctttgtagtttcctctctaaatgtgagtgtgtagagat 53611450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 3130333 - 3130383
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 476  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  3130333 caacttatttggcttctttgtgcctgggttgtgtggaatgaacaaaataat 3130383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 622 - 696
Target Start/End: Complemental strand, 29298626 - 29298553
Alignment:
Q  622 tagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata 696  Q
    ||||| ||||| ||| ||||| |||||| |||||||||||||||||||||||| | |||||||||| ||||||||    
T  29298626 tagttagttagcggcatgtagagcaagtaactcaacttagcctataagtactt-gttttgtattcaattgatata 29298553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 7663592 - 7663634
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  7663592 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 7663634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 51203233 - 51203264
Alignment:
Q  131 ttttcgtccctataaatattgcgaattttgat 162  Q
    ||||||||||||||||||||||||||||||||    
T  51203233 ttttcgtccctataaatattgcgaattttgat 51203264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 31063631 - 31063681
Alignment:
Q  215 ttctgttaatctatgttttctataccattagtgaaagatattattgtaaaa 265  Q
    |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||    
T  31063631 ttcttttaatttatgttttccataccattagtgaaggatatttttgtaaaa 31063681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 47540711 - 47540669
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    |||||||| || ||||| |||||||||||||||||||||||||    
T  47540711 caacttatttggcttctctgtgcctgggttgtgtggaatgaac 47540669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 20673495 - 20673446
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    ||||| ||||| ||||| ||||||| |||||| |||||||||||||||||    
T  20673495 caactaatatggcttctatgtgcctaggttgtttggaatgaacataataa 20673446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 23873842 - 23873879
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  23873842 cttctttgtgcctgggttgtttggaatgaacgtaataa 23873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Complemental strand, 55298397 - 55298360
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  55298397 cttctttgtgcctgggttgtttggaatgaacgtaataa 55298360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 367 - 476
Target Start/End: Complemental strand, 31862438 - 31862329
Alignment:
Q  367 atcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatga 466  Q
    ||||||| ||||||||||| ||| ||||| || |||| ||||||  ||| || ||  | ||||| ||||| |||||||||| ||||||| ||||||||||    
T  31862438 atcatttattgcagtttactcatatgacaggtggtggcaaagctagacggtctttcatgcaactaatatggcttctttgtgtctgggttttgtggaatga 31862339  T
Q  467 acataataat 476  Q
    ||||||||||    
T  31862338 acataataat 31862329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 570 - 606
Target Start/End: Complemental strand, 6600782 - 6600746
Alignment:
Q  570 tgtggataaatccaactatatttgttggttagttagt 606  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6600782 tgtggataaatccaactatgtttgttggttagttagt 6600746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 10487260 - 10487300
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatga 466  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  10487260 caacttatttggcttctttgtgcctgggttgtgtggaatga 10487300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 34480742 - 34480692
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 476  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| |||||||    
T  34480742 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataat 34480692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 34858059 - 34858096
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  34858059 cttctttgtgcctgggttgtttggaatgaacgtaataa 34858096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 693
Target Start/End: Complemental strand, 4810081 - 4809991
Alignment:
Q  601 gttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat 693  Q
    ||||||||||||||| |||||||||| || | || ||||| |||||||| |||  |||||||||||||||||||   ||||||||||||||||    
T  4810081 gttagtaactaactacttagttagttggtcaatgacttgttgtgcaagtaactttacttagcctataagtactt--gtttgtattcagttgat 4809991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 7146827 - 7146778
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  7146827 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataa 7146778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 30167699 - 30167741
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  30167699 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 30167741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 2813787 - 2813903
Alignment:
Q  359 tatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtg 458  Q
    |||||| |||||||| || ||||| || ||||||||| || ||||    |||  ||| |||||| | ||||| ||||||||||| ||||||||||| ||     
T  2813787 tatttcaaatcattttttacagttcactcatttgacaggtggtggtgttgctagacgttcgtttatgcaactaatatgacttctatgtgcctgggtagtc 2813886  T
Q  459 tggaatgaacataataa 475  Q
    |||||||||| ||||||    
T  2813887 tggaatgaacgtaataa 2813903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 805
Target Start/End: Complemental strand, 496648 - 496582
Alignment:
Q  736 tcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattct 805  Q
    ||||||||| |||||||||||  ||||||||||||||| |||    ||||||||||||||||||||||||    
T  496648 tcaataata-aagagttttatttttcctttgtagtttcttctac--gtgtgagtgtgtagagatcattct 496582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 842
Target Start/End: Original strand, 54017245 - 54017291
Alignment:
Q  796 agatcattctattctttctctaaattatgtatgtgcatgttctatca 842  Q
    ||||||||||| ||||||||| |||| ||||||||| ||||||||||    
T  54017245 agatcattctaatctttctctcaattttgtatgtgcgtgttctatca 54017291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 9378883 - 9378842
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaa 467  Q
    ||||| ||||||||||| |||||||||||||| |||||||||    
T  9378883 caactcatatgacttctgtgtgcctgggttgtttggaatgaa 9378842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 475
Target Start/End: Complemental strand, 23601547 - 23601510
Alignment:
Q  438 cttctttgtgcctgggttgtgtggaatgaacataataa 475  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  23601547 cttctttgtgcctgggttgtttggaatgaacgtaataa 23601510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 734 - 801
Target Start/End: Complemental strand, 17130 - 17063
Alignment:
Q  734 attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca 801  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||    
T  17130 attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca 17063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 734 - 801
Target Start/End: Complemental strand, 1148 - 1081
Alignment:
Q  734 attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca 801  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||    
T  1148 attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca 1081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 7461 - 7419
Alignment:
Q  426 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 468  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  7461 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 7419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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