View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8057_low_11 (Length: 267)
Name: NF8057_low_11
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8057_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 5689804 - 5690040
Alignment:
| Q |
15 |
attaactaattggtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaa |
114 |
Q |
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| T |
5689804 |
attaactaatttgtaaaaccagcaatgacagcatgaggctcaagagctttagcagcaggagaagcttcaacagcaggagaaggctcaacatgtttaccaa |
5689903 |
T |
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| Q |
115 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689904 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacacc |
5690003 |
T |
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| Q |
215 |
ttcaaatattccagaaccaccagtcacagctagataa |
251 |
Q |
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| T |
5690004 |
ttcaaatattccagaaccaccagtcacagctagataa |
5690040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 25914500 - 25914723
Alignment:
| Q |
27 |
gtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaagaagctcttgtg |
126 |
Q |
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||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||| |
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| T |
25914500 |
gtaaaaccagcaatggtagcatgtggctcaagagctttagcagcaggagaagcttcaacattagggttaggctcaactggtttaccaagaagctcttgtg |
25914599 |
T |
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| Q |
127 |
gcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattcc |
226 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||| || ||||||||||||| ||||| |
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| T |
25914600 |
gcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattcc |
25914699 |
T |
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| Q |
227 |
agaaccaccagtcacagctagata |
250 |
Q |
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|| |||||||||||||| |||||| |
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| T |
25914700 |
agtaccaccagtcacagttagata |
25914723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 6792803 - 6792654
Alignment:
| Q |
95 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
194 |
Q |
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|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
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| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
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| Q |
195 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagc |
244 |
Q |
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|| |||||||| | |||||||||||||||||||| |||||||||||||| |
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| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagc |
6792654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 6800246 - 6800131
Alignment:
| Q |
123 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
222 |
Q |
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|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
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| Q |
223 |
ttccagaaccaccagt |
238 |
Q |
| |
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|||||| |||||||| |
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| T |
6800146 |
ttccagttccaccagt |
6800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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