View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8057_low_12 (Length: 246)
Name: NF8057_low_12
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8057_low_12 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 28153226 - 28153430
Alignment:
| Q |
13 |
attctcattttccattaattggagaaatgtacaatacatgcattaattataaacacacctcttgctcagatgaagatgtagaatgtgttgtatgtctctc |
112 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153226 |
attctcattttccaataattggagaaatgtacaatacatgcattaattataaacacacatcttgctcagatgaagatgtagaatgtgttgtatgtctctc |
28153325 |
T |
|
| Q |
113 |
caaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153326 |
caaaatagaagaaggagatgaaattagagtattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgc |
28153425 |
T |
|
| Q |
213 |
cctct |
217 |
Q |
| |
|
||||| |
|
|
| T |
28153426 |
cctct |
28153430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 28148572 - 28148775
Alignment:
| Q |
14 |
ttctcattttccattaattggagaaatgtacaatacatgcattaattataaacacacctcttgctcagatgaagatgtagaatgtgttgtatgtctctcc |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28148572 |
ttctcattttccaataattggagaaatgtacaatacatgcattaattataaacacaaatcttgctcagatgaagatgtagaatgtgttgtgtgtctctcc |
28148671 |
T |
|
| Q |
114 |
aaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28148672 |
aaaatagaagaaggagatgaaattagagtattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgcc |
28148771 |
T |
|
| Q |
214 |
ctct |
217 |
Q |
| |
|
|||| |
|
|
| T |
28148772 |
ctct |
28148775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 26399507 - 26399309
Alignment:
| Q |
13 |
attctcattttccattaattggagaaatgtacaatacatgcattaattataaacacacctcttgctcagatgaagatgtagaatgtgttgtatgtctctc |
112 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | || ||||| ||||| ||| || |||| |||||| ||||||||||||||| ||| ||||| | |
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|
| T |
26399507 |
attctcattttccaataattgaagaaatgtatagtatatgca---attatgaacccatctctgactcagaggaagatgtagaatgttctgtgtgtctatg |
26399411 |
T |
|
| Q |
113 |
caaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgt |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||| | |||||||||||| ||||||||| ||||| ||| |||||||| |
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|
| T |
26399410 |
taaaatagaagaaggagatgagattagagtattgaggtgtgatcatatgtttcatagatattgtttggatagatgggttggtttcaagaacaacacttgt |
26399311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 17157296 - 17157494
Alignment:
| Q |
13 |
attctcattttccattaattggagaaatgtacaatacatgcattaattataaacacacctcttgctcagatgaagatgtagaatgtgttgtatgtctctc |
112 |
Q |
| |
|
||||| |||||||| ||||||||||||| || ||| ||||| ||||| |||||||| | ||||| |||||||||| ||||||| ||| ||||||| |
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|
| T |
17157296 |
attctaattttccaataattggagaaatatatgatatatgca---attatgaacacacccatggctcaaatgaagatgttgaatgtgctgtgtgtctctg |
17157392 |
T |
|
| Q |
113 |
caaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| || ||||| ||||||||||| ||| ||||||| ||||||||| || | ||||| |||||||||||| |
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|
| T |
17157393 |
caaaatagaagaaggagatgagattagtgtattgagatgtgaccatatgtatcacaaatattgtttagataaatggattagtttcaagaaccacacttgt |
17157492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 17164262 - 17164475
Alignment:
| Q |
13 |
attctcattttccattaattggagaaatgtacaatacatgcattaattataaacacacctcttgctcagatgaagatgtagaatgtgttgtatgtctctc |
112 |
Q |
| |
|
||||| |||||||| || ||||||||||||| | | ||||| ||||| |||||| | | ||||| |||||||||| ||||||| || ||||||| |
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|
| T |
17164262 |
attctaattttccaatatttggagaaatgtatgacatatgca---attatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctg |
17164358 |
T |
|
| Q |
113 |
caaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| || ||||| |||||||| || ||| ||||||| ||||||||| |||| ||||| |||||||||||| |
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|
| T |
17164359 |
caaaatagaagaaggagatgagattagtgtattgagatgtgaccatatgtaccacaaatattgtttagataaatggattggtttcaagaaccacacttgt |
17164458 |
T |
|
| Q |
213 |
cctctctgtagggaatc |
229 |
Q |
| |
|
|| || ||||| ||||| |
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|
| T |
17164459 |
cccctttgtagagaatc |
17164475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 17161278 - 17161416
Alignment:
| Q |
76 |
gctcagatgaagatgtagaatgtgttgtatgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattg |
175 |
Q |
| |
|
||||| |||||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||| | ||| || ||||| ||||||||||| ||| |||| |
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|
| T |
17161278 |
gctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgaccatatgtatcacaaatattg |
17161377 |
T |
|
| Q |
176 |
tttggataaatgggttggattcaaaaaccacacttgtcc |
214 |
Q |
| |
|
||| ||||||||| || | ||||| |||||||||||||| |
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|
| T |
17161378 |
tttagataaatggattagtttcaagaaccacacttgtcc |
17161416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 19317335 - 19317548
Alignment:
| Q |
13 |
attctcattttccattaattggagaaatgtacaatacatgcattaattataaacacacctcttgctcagatgaagatgtagaatgtgttgtatgtctctc |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||||| ||||| || || | || |||||| ||||||||||||||||||| ||||| | |
|
|
| T |
19317335 |
attctcattttccaataattggagaaatgtataatatatgca---attatgaatccatccctgactcagagaaagatgtagaatgtgttgtgtgtctatg |
19317431 |
T |
|
| Q |
113 |
caaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19317432 |
caaaatagaagaaggagatgatattagagtattgaagtgtgatcatatgtatcatagacattgtttggataaatgggttgctttcaaaaaccacacttgt |
19317531 |
T |
|
| Q |
213 |
cctctctgtagggaatc |
229 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
19317532 |
cctctttgtagagaatc |
19317548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 25217333 - 25217186
Alignment:
| Q |
82 |
atgaagatgtagaatgtgttgtatgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttgga |
181 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||||||||| ||| ||||||| || |
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|
| T |
25217333 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttaga |
25217234 |
T |
|
| Q |
182 |
taaatgggttggattcaaaaaccacacttgtcctctctgtagggaatc |
229 |
Q |
| |
|
||||||| || | ||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
25217233 |
taaatggcttagtttcaagaaccatacttgtcctctttgtagagaatc |
25217186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 25229146 - 25228999
Alignment:
| Q |
82 |
atgaagatgtagaatgtgttgtatgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttgga |
181 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||||||||| ||| ||||||| || |
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|
| T |
25229146 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttaga |
25229047 |
T |
|
| Q |
182 |
taaatgggttggattcaaaaaccacacttgtcctctctgtagggaatc |
229 |
Q |
| |
|
||||||| || | ||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
25229046 |
taaatggcttagtttcaagaaccatacttgtcctctttgtagagaatc |
25228999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 25233873 - 25233726
Alignment:
| Q |
82 |
atgaagatgtagaatgtgttgtatgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatcataaaaattgtttgga |
181 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||||||||| ||| ||||||| || |
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|
| T |
25233873 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttaga |
25233774 |
T |
|
| Q |
182 |
taaatgggttggattcaaaaaccacacttgtcctctctgtagggaatc |
229 |
Q |
| |
|
||||||| || | ||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
25233773 |
taaatggcttagtttcaagaaccatacttgtcctctttgtagagaatc |
25233726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 25225825 - 25225741
Alignment:
| Q |
82 |
atgaagatgtagaatgtgttgtatgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatatgtatca |
166 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||||||||| |
|
|
| T |
25225825 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatca |
25225741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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