View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8057_low_14 (Length: 230)

Name: NF8057_low_14
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8057_low_14
NF8057_low_14
[»] chr1 (1 HSPs)
chr1 (59-218)||(19317480-19317639)
[»] chr5 (6 HSPs)
chr5 (127-207)||(17164418-17164498)
chr5 (140-218)||(28153374-28153452)
chr5 (140-218)||(28148719-28148797)
chr5 (127-207)||(17157452-17157532)
chr5 (127-207)||(17161374-17161454)
chr5 (127-215)||(26399271-26399359)
[»] chr3 (3 HSPs)
chr3 (135-218)||(25217171-25217254)
chr3 (135-218)||(25228984-25229067)
chr3 (135-218)||(25233711-25233794)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 19317639 - 19317480
Alignment:
Q  59 ttctggacttgatagatctaaccctaaaactgaaaaaggattatagtattctctgcaatgattttcaatgatgaccctttctggtctcaatgattctcta 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19317639 ttctggacttgatagatctaaccctaaaactgaaaaaggattatagtattctctgcaatgattttcaatgatgaccctttctggtctcaatgattctcta 19317540  T
Q  159 caaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19317539 caaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatac 19317480  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 17164498 - 17164418
Alignment:
Q  127 tgatgaccctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaat 207  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||| |||||||    
T  17164498 tgatggccctttctggtctcaatgattctctacaaaggggacaagtgtggttcttgaaaccaatccatttatctaaacaat 17164418  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 28153452 - 28153374
Alignment:
Q  140 tggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatac 218  Q
    |||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||| | ||||||||    
T  28153452 tggtctcaatgattctctgcaaagagggcaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatac 28153374  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 28148797 - 28148719
Alignment:
Q  140 tggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatac 218  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||| | ||||||||    
T  28148797 tggtctcaacgattctctgcaaagagggcaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatac 28148719  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 17157532 - 17157452
Alignment:
Q  127 tgatgaccctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaat 207  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||  || ||||||||| |||||||    
T  17157532 tgatggccctttctggtctcaatgattctctgcaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaat 17157452  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 17161454 - 17161374
Alignment:
Q  127 tgatgaccctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaat 207  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||  || ||||||||| |||||||    
T  17161454 tgatggccctttctggtctcaatgattctctgcaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaat 17161374  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 26399271 - 26399359
Alignment:
Q  127 tgatgaccctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatga 215  Q
    ||||| ||||| ||| ||||||||||||||| ||||| |||||||||| ||| |||||| |||||||| |||||||||||| |||||||    
T  26399271 tgatggcccttcctgatctcaatgattctctgcaaagtggacaagtgttgttcttgaaaccaacccatctatccaaacaatatctatga 26399359  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 25217171 - 25217254
Alignment:
Q  135 ctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatac 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||  || ||||||||| ||||||||| | ||||||    
T  25217171 ctttctggtctcaatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatac 25217254  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 25228984 - 25229067
Alignment:
Q  135 ctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatac 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||  || ||||||||| ||||||||| | ||||||    
T  25228984 ctttctggtctcaatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatac 25229067  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 25233711 - 25233794
Alignment:
Q  135 ctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatac 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||  || ||||||||| ||||||||| | ||||||    
T  25233711 ctttctggtctcaatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatac 25233794  T

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