View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8057_low_19 (Length: 201)
Name: NF8057_low_19
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8057_low_19 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 137; Significance: 9e-72; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 60811 - 60975
Alignment:
| Q |
21 |
tggtcacaaaaaaactagtatnnnnnnnnggagtacatgacagattcgatgcacctgccgatctatttatggtgttatattaggtcttatttgtgtcatg |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60811 |
tggtcacaaaaaaactagtataaaaaaaaggagtacatgacagattcgatgcacctgccgatctatttatggtgttatattaggtcttatttgtgtcatg |
60910 |
T |
|
| Q |
121 |
ttggctgcaaagtttgtgaatatttgatgttgaacaatttatttttgtggtttgattttcatttt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
60911 |
ttggctgcaaagtttgtgaatatttgatgttgaacaatttatttttgtggtttaattttcatttt |
60975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 9e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 40912284 - 40912120
Alignment:
| Q |
21 |
tggtcacaaaaaaactagtatnnnnnnnnggagtacatgacagattcgatgcacctgccgatctatttatggtgttatattaggtcttatttgtgtcatg |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40912284 |
tggtcacaaaaaaactagtataaaaaaaaggagtacatgacagattcgatgcacctgccgatctatttatggtgttatattaggtcttatttgtgtcatg |
40912185 |
T |
|
| Q |
121 |
ttggctgcaaagtttgtgaatatttgatgttgaacaatttatttttgtggtttgattttcatttt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40912184 |
ttggctgcaaagtttgtgaatatttgatgttgaacaatttatttttgtggtttaattttcatttt |
40912120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University