View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8057_low_6 (Length: 473)
Name: NF8057_low_6
Description: NF8057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8057_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 80 - 453
Target Start/End: Original strand, 1783577 - 1783950
Alignment:
| Q |
80 |
cgcgagtttgacacttgttaactttatatcatcatattatagacaagataatagaacgggtaagttacctgagaaactatagtataccggaggcgatttg |
179 |
Q |
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| T |
1783577 |
cgcgagtttgacacttattaactttatatcatcatattatagacaagataatagaacgggtgagttacctgagaaactatagtataccggaggcgatttg |
1783676 |
T |
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| Q |
180 |
ttgaatctaatctatctgatgcaattgaaaaattatgaacatgactactgccattatctgaatgatgagtctcatcattctcatccaaaggctgagcttt |
279 |
Q |
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| T |
1783677 |
ttgaatctaatctatctgatgcaattgaaaaattatgaacatgactactaccattatctgaatgatgagtctcatcattctcatccaaaggctgagcttt |
1783776 |
T |
|
| Q |
280 |
tttcatttcagatcttttatggtagcccataatcaaagcttccataattaaagttccaatggctgctaccattgtaacaaaacctgagaaaggaaacaat |
379 |
Q |
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| T |
1783777 |
tttcatttcagatcttttatggtagcccataatcaaagcttccataattaaagttccaatggctgctaccattgtaacaaaacctgagaaaggaaacaat |
1783876 |
T |
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| Q |
380 |
ttccatggcttttcgcctatacaaggactcgttaaggcttcgaaagcatctggaagtatgtgtatgaacccggt |
453 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1783877 |
ttccatggcttttcgcttatacaaggactcgttaaggcttcgaaagcatctggaagtatgtgtatgaacccggt |
1783950 |
T |
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