View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_high_13 (Length: 298)
Name: NF8058_high_13
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 28 - 294
Target Start/End: Original strand, 35637091 - 35637356
Alignment:
| Q |
28 |
atgttgtcattcttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtgagaaaagagagtgattttg |
127 |
Q |
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| T |
35637091 |
atgttgtcattcttccttttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtgagaaaagagagtgattttg |
35637190 |
T |
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| Q |
128 |
attgtaagtgaaagagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaatattctatatggtatttatatatgtgaaatgaagggtaaaa |
227 |
Q |
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| T |
35637191 |
attgtaagtgaaagagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaatattc-ctatgatatttatatatgtgaaatgaagggtaaaa |
35637289 |
T |
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| Q |
228 |
tagactcaattaactgaaaacagtctcaacagaatcctaacagaatgtaactaacttcatcattgca |
294 |
Q |
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| T |
35637290 |
tagactcaattaactgaaaacagtctcaacagaatcccaacagaatgtaactaacttcatcattgca |
35637356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 35630627 - 35630804
Alignment:
| Q |
18 |
gaataaagccatgttgtcattcttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatg--------tga |
109 |
Q |
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| T |
35630627 |
gaataaagctaagttgtcattcttcctgttcctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttga |
35630726 |
T |
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| Q |
110 |
gaaaagagagtgattttgattgtaagtgaaagagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaat |
187 |
Q |
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| T |
35630727 |
gcaaagagagtgattttgattgtgagtgagagagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaat |
35630804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 35633266 - 35633308
Alignment:
| Q |
67 |
ttttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
109 |
Q |
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| T |
35633266 |
ttttcaagccaaggatgcatttttgaaggaaaaggaaatgtga |
35633308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 35633403 - 35633443
Alignment:
| Q |
251 |
tctcaacagaatcctaacagaatgtaactaacttcatcatt |
291 |
Q |
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| T |
35633403 |
tctcaacagaaacctaacagaatttaactaacttcgtcatt |
35633443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 10318529 - 10318438
Alignment:
| Q |
18 |
gaataaagccatgttgtcattcttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
109 |
Q |
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| T |
10318529 |
gaataaagcaaagttgtcattcctcatgttcctgtatagattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtga |
10318438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 10335773 - 10335682
Alignment:
| Q |
18 |
gaataaagccatgttgtcattcttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
109 |
Q |
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| T |
10335773 |
gaataaagcaaagttgtcattcctcatgttcctgtatagattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtga |
10335682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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