View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8058_high_18 (Length: 249)

Name: NF8058_high_18
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8058_high_18
NF8058_high_18
[»] chr7 (3 HSPs)
chr7 (90-169)||(37162797-37162876)
chr7 (94-168)||(12633031-12633105)
chr7 (104-168)||(12632493-12632557)
[»] chr5 (5 HSPs)
chr5 (94-169)||(17511924-17511999)
chr5 (104-168)||(17515547-17515611)
chr5 (104-158)||(21044619-21044673)
chr5 (104-169)||(21045082-21045147)
chr5 (104-166)||(8705764-8705826)
[»] chr2 (1 HSPs)
chr2 (94-169)||(8151560-8151631)
[»] chr6 (3 HSPs)
chr6 (104-169)||(12142954-12143019)
chr6 (104-169)||(12142109-12142174)
chr6 (115-158)||(12143531-12143574)
[»] scaffold0133 (1 HSPs)
scaffold0133 (104-169)||(10034-10099)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 37162797 - 37162876
Alignment:
Q  90 ggactgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 169  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  37162797 ggactgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccatgtattgcttcttttt 37162876  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 12633105 - 12633031
Alignment:
Q  94 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 168  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12633105 tgcacttacgtaacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacatgttgcttctttt 12633031  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 12632493 - 12632557
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 168  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  12632493 taacattgtggcgggctatgtcacatgacatagcaaataaaattgtgccacgtgttgcttctttt 12632557  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 17511924 - 17511999
Alignment:
Q  94 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 169  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  17511924 tgcacttacgtaacattgtggcgggctatgtcacatggcatagccagtaaaattgtgccacatgttgcttcttttt 17511999  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 17515611 - 17515547
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 168  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17515611 taacattgtggcgggctatgtcacatgacatagcaagtaaaattgtgccacatgttgcttctttt 17515547  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 21044619 - 21044673
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 158  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  21044619 taacattgtggcgggctatgtcacatgacatagctagtaatattgcgccacgtgt 21044673  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 21045147 - 21045082
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 169  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||| ||||  |||||||||    
T  21045147 taacattgtggcgggctatgtcacatgacatagccagtaacatttcgccatgtgtcacttcttttt 21045082  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 8705764 - 8705826
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctt 166  Q
    |||||||  |||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||    
T  8705764 taacattccggcgggctatctcacatgacatagcgagtaatattgtaccacgtgttgcttctt 8705826  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 8151560 - 8151631
Alignment:
Q  94 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 169  Q
    |||| |||| |||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||||||    
T  8151560 tgcacttacgtaacattgtggcgggctatgtcacatgacat----agtaagattgtgccacgtgttgcttcttttt 8151631  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 12142954 - 12143019
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 169  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||  |||||||||    
T  12142954 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacgtgtcacttcttttt 12143019  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 12142109 - 12142174
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 169  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||||| |||  |||||||||    
T  12142109 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacatgtcacttcttttt 12142174  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 12143574 - 12143531
Alignment:
Q  115 cgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 158  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  12143574 cgggctatgtcacatgacatagccaataatattgtgccacgtgt 12143531  T

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Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 10099 - 10034
Alignment:
Q  104 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 169  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||  ||| ||||  |||||||||    
T  10099 taacattgtggtgggctatgtcacatgacatagccagtaatattgcaccatgtgtcacttcttttt 10034  T

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