View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_high_27 (Length: 221)
Name: NF8058_high_27
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_high_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49950014 - 49950234
Alignment:
| Q |
1 |
gccatttaccttgccctcaatcctcaaagataatcactcaagaaaacgagagtgaaagctttgatcattcctccaatcaatcctcgctacctaaggtgtt |
100 |
Q |
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| T |
49950014 |
gccatttcccttgccctcaatcctcaaagataatcactcaagaaaacgagagtgaaagctttgatcattcctccaatgaatcctcgctacctaaggtgtt |
49950113 |
T |
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| Q |
101 |
tcaaatattttcccaagcctataatctcatacaaaatctctcatcccttagccttgattccataaaatatatctctttcggtgatctatcatcggaacaa |
200 |
Q |
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| T |
49950114 |
tcgaatattttcccaagcctataagctcatacaaaatctctcatcccttagccttgattccataaaatatatctctttcggtgatctatcatcggaacaa |
49950213 |
T |
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| Q |
201 |
aatatacctatcaaataatcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
49950214 |
aatatacctatcaaataatcc |
49950234 |
T |
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