View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8058_high_4 (Length: 464)
Name: NF8058_high_4
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 44178606 - 44179043
Alignment:
| Q |
17 |
aattaaacaatacataaaagacacatctttataattttgaattgatcaacaacctaacatccaagaaacacactttccttgatgcaatcaacaatctcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44178606 |
aattaaacaatacataaaagacacatctttataattttgaattgatcaacaacctaacatccaagaaacacactttccttgatgcaatcaacaatctcca |
44178705 |
T |
|
| Q |
117 |
aatccatgtcttgaaatgcacaaacaacaatacaacttttattcaaaatcaaacaccatgcaattggcaaaccttaatcatgcaacaaaagtatctagat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44178706 |
aatccatgtcttgaaatgcacaaacaacaatacaacttttattcaaaatcaaacaccatgcaattggcaaaccttaatcatgcaacaaaagtatctagat |
44178805 |
T |
|
| Q |
217 |
gtgaaattcaaaattcagattactttaactaaacccatttttctttctacatcagaaacagtcttcaaatgcagaacaagaaacaaaaaatgccattaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44178806 |
gtgaaattcaaaattcagattactttaactaaacccatttttctttctacatcagaaacaatcttcaaatgcagaacaagaaacaaaaagtgccattaat |
44178905 |
T |
|
| Q |
317 |
gttcatataaaaatattgtaaaaattacccatttgagaatgtgtatcaaagattcaatctttataattttcttctcttttaagaacaatttctcatggac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44178906 |
gttcatataaaaatattgtaaaaattacccatttgagaatgtgtatcaaagattcaatctttataattttcttctcttttaagaacaatttctcatggac |
44179005 |
T |
|
| Q |
417 |
ccagataaaataatcacaaatccaagaaacccaacaac |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44179006 |
ccagataaaataatcacaaatccaagaaacccaacaac |
44179043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University