View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_high_5 (Length: 435)
Name: NF8058_high_5
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 1807427 - 1807837
Alignment:
| Q |
11 |
cagagataatgacagccggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtttacaagttagttcctttatctgt |
110 |
Q |
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| T |
1807427 |
cagagataatgacagccggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtgtacaagttagttcctttatctgt |
1807526 |
T |
|
| Q |
111 |
tgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggc |
210 |
Q |
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| T |
1807527 |
tgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggc |
1807626 |
T |
|
| Q |
211 |
caaagaccttggtttgggttagatggtttggttctagccattatttgtgcttgttttattgtgattgtgaatggagctggccagaaaaatagcggttgtt |
310 |
Q |
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| T |
1807627 |
caaagaccttggtttgggttagatggtttggttctagccattgtttgtgcttgttttattgtgattgtgaatggagctggccagaaaaatagcggttgtt |
1807726 |
T |
|
| Q |
311 |
gcggtgctcccgatgatggtaatttggatggccaaattcaaaggagtgatgaaggtggaagaaagactaagatgaataaactaagaaagattattttttc |
410 |
Q |
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| T |
1807727 |
gcggtgctcccgaagatggtaatctggatggccaaattcaaagaagtgatgaaggtggaagaaagactaagatgaataaactaagaaagattattttttc |
1807826 |
T |
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| Q |
411 |
acttccttctg |
421 |
Q |
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| T |
1807827 |
acttccttctg |
1807837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 73 - 290
Target Start/End: Original strand, 1875129 - 1875346
Alignment:
| Q |
73 |
ttgatgcagctggtttacaagttagttcctttatctgttgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtga |
172 |
Q |
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| T |
1875129 |
ttgatgcagttggtgtacaagtttattcctttatctgttgtgaggggaattcaactagcacaaggtttatcatttgctttaactgctgttaaatatgtga |
1875228 |
T |
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| Q |
173 |
gaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggtttgggttagatggtttggttctagccattatttgtgcttgttttattgt |
272 |
Q |
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| T |
1875229 |
ggaaaatgcaagatcttccaaagtctaaagctttaggtcaaagaccttggtttggattagatggattggttttagccattgtttgtgtttgtttcattgt |
1875328 |
T |
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| Q |
273 |
gattgtgaatggagctgg |
290 |
Q |
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| T |
1875329 |
aattgtgaatggtgctgg |
1875346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 28 - 290
Target Start/End: Complemental strand, 25798768 - 25798506
Alignment:
| Q |
28 |
ggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtttacaagttagttcctttatctgttgtgaggggaattcaac |
127 |
Q |
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| T |
25798768 |
ggaatcttgaccggcggcgtgttgttcattcttggcatcacaggattgatgaagctgggttacaagtttattcctctacctgttgtaaggggcattcaac |
25798669 |
T |
|
| Q |
128 |
tagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggtttgg |
227 |
Q |
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| T |
25798668 |
tagcacaaggtttgtcatttgctttaactgctgttaaatatgtgaagaaagtgcaagatcttcccaagtctaaagctttgggtgaaaggccttggttagg |
25798569 |
T |
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| Q |
228 |
gttagatggtttggttctagccattatttgtgcttgttttattgtgattgtgaatggagctgg |
290 |
Q |
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| T |
25798568 |
gttagatgggttggttctagctattgtttgtacttgttttatattgattgttaatggagctgg |
25798506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 49993838 - 49993732
Alignment:
| Q |
100 |
cctttatctgttgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtcta |
199 |
Q |
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||||||| |||||| | || ||||| || |||||||||||||| ||||||||||| ||| |||||||||| |||||||| |||||| | |||||||||| |
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| T |
49993838 |
cctttatgtgttgttcgagggattcagcttgcacaaggtttgtcttttgctttaactgctattaaatatgttagaaaagttcaagatttaccaaagtcta |
49993739 |
T |
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| Q |
200 |
aatcttt |
206 |
Q |
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| T |
49993738 |
aatcttt |
49993732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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