View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_high_9 (Length: 336)
Name: NF8058_high_9
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_high_9 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 3204144 - 3203821
Alignment:
| Q |
13 |
aatattatgccactagctggtttcataattgtaagtaagaatatgataaaaattaaagtatactttatgcaatgaggttgtagctaatactttataattt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3204144 |
aatattatgccactagctggtttcataattgtaagtaagaatatgataaaaattaaagtatactttatgcaatgaggttgtagctaatactttataattt |
3204045 |
T |
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| Q |
113 |
tcacctttgtagttcaagaaagatacggataacgctgacccaattgtaacaatccaaacagtgcttcaagaggaatgaatttaattttgggcttatatat |
212 |
Q |
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| T |
3204044 |
tcacctttgtagttcaagaaagatacggataacgctgacccaattgtaacaatccaaacagtgcttcaagaggaatgaatttaattttgggcttatatat |
3203945 |
T |
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| Q |
213 |
atacaaggaaagaattttgtattagaaaaggcatataatttttgtccaaaaaacagaagaaaatgcattgaaatgcataggcaagacttgatgctaaatc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203944 |
atacaaggaaagaattttgtattagaaaaggcatatattttttgtccaaaaaacagaagaaaatgcattgaaatgcataggcaagacttgatgctaaatc |
3203845 |
T |
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| Q |
313 |
tataaacgacacatgcatgcaaat |
336 |
Q |
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| T |
3203844 |
tataaacgacacatgcatgcaaat |
3203821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 3512485 - 3512603
Alignment:
| Q |
68 |
aagtatac-tttatgcaatgaggttgtagctaatactttata--attttcacctttgtagttcaagaaagatacggataacgctga-cccaattgtaaca |
163 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||| |
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| T |
3512485 |
aagtatacatttatgcaatgaggttgtagctaatactttatatgattttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaaca |
3512584 |
T |
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| Q |
164 |
atccaaacagtgcttcaag |
182 |
Q |
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|||| |||||||||||||| |
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| T |
3512585 |
atcctaacagtgcttcaag |
3512603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 3508930 - 3509030
Alignment:
| Q |
238 |
aaaaggcatataatttttgtccaaaaaac--agaagaaaatgcattgaaatgcataggcaagacttgatgctaaatctataaacgacacatgcatgcaaa |
335 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
3508930 |
aaaaggcatataattttagtccaaaaaatggagaagaaaatgcattgaaatacataggccagacttgatgctaaatctataaatgacacatgcatgcaaa |
3509029 |
T |
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| Q |
336 |
t |
336 |
Q |
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| T |
3509030 |
t |
3509030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 3651289 - 3651177
Alignment:
| Q |
76 |
tttatgcaatgaggttgtagctaatactttata--attttcacctttgtagttcaagaaagatacggataacgctga-cccaattgtaacaatccaaaca |
172 |
Q |
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|||||||||| | |||| ||||||||||||||| ||||||||| |||| |||||||||| ||||| |||| | ||| | |||| |||||||| |||||| |
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| T |
3651289 |
tttatgcaataatgttgaagctaatactttatataattttcaccgttgtggttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaaca |
3651190 |
T |
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| Q |
173 |
gtgcttcaagagg |
185 |
Q |
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| T |
3651189 |
gcgcttcaagagg |
3651177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 3500318 - 3500382
Alignment:
| Q |
82 |
caatgaggttgtagctaatactt--tataattttcacctttgtagttcaagaaagatacggataa |
144 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |||| |
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| T |
3500318 |
caatgaggttgtagctaatactttgtataactttcacctttgtggttcaagtaagatacgaataa |
3500382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 3512403 - 3512457
Alignment:
| Q |
13 |
aatattatgccactagctggtttcataattgtaagtaagaatatgataaaaatta |
67 |
Q |
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||||||| ||||||| ||| |||| ||||||||| |||||||||||| ||||||| |
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| T |
3512403 |
aatattacgccactatctgatttcgtaattgtaattaagaatatgattaaaatta |
3512457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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