View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8058_low_10 (Length: 352)

Name: NF8058_low_10
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8058_low_10
NF8058_low_10
[»] chr2 (2 HSPs)
chr2 (14-334)||(12233635-12233953)
chr2 (39-125)||(7540668-7540754)
[»] chr1 (1 HSPs)
chr1 (108-182)||(52550439-52550512)
[»] chr3 (1 HSPs)
chr3 (123-182)||(50672096-50672154)
[»] chr4 (2 HSPs)
chr4 (123-182)||(23591125-23591183)
chr4 (68-112)||(23591015-23591059)
[»] scaffold0219 (1 HSPs)
scaffold0219 (71-112)||(22785-22826)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 12233635 - 12233953
Alignment:
Q  14 tgtttgcattaggaatttaagaggctttgccaagtattggtgtataaagtttactaataaattttggaagttatcattattctccaaattcagaaagaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12233635 tgtttgcattaggaatttaagaggctttgccaagtattggtgtataaagtttactaataaattttggaagttatcattattctccaaattcagaaagaag 12233734  T
Q  114 acaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaacttttctcaagcaaaggaatatgcagcagat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12233735 acaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaacttttctcaagcaaaggaatatgcagcagat 12233834  T
Q  214 taaagtcctgaaggtaacttgaagaaattacatgtaaactaatataaagtccaaattaatcacaatggaaatagaagtgtctacatcatggtttcaacac 313  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  12233835 taaagtcctgaagataacttgaagaaattacatgtaaactaatataaagtccaaattaatcacaatggaaatagaagtgtctacatcatggtttca--ac 12233932  T
Q  314 acactgttgttggcatgattt 334  Q
    |||||||||||||||||||||    
T  12233933 acactgttgttggcatgattt 12233953  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 7540668 - 7540754
Alignment:
Q  39 tttgccaagtattggtgtataaagtttactaataaattttggaagttatcattattctccaaattcagaaagaagacaagaccattt 125  Q
    |||| ||||||||||||  |||||||| |||||||||||||| |||||||||||| || ||||||||||| ||| | ||||| ||||    
T  7540668 tttgacaagtattggtgcttaaagttttctaataaattttgggagttatcattatcctgcaaattcagaaggaaaaaaagactattt 7540754  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 52550512 - 52550439
Alignment:
Q  108 aagaagacaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa 182  Q
    |||||||||  |||||||||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||    
T  52550512 aagaagacatcaccatttttctataatacaaattctgctgaagccttagtctaat-tttttaaatttcaatacaa 52550439  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 50672096 - 50672154
Alignment:
Q  123 tttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa 182  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||||| |||||||    
T  50672096 tttttctataatacaaatcctgatgaaaccttagtctaa-atttttaaattttaatacaa 50672154  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 23591125 - 23591183
Alignment:
Q  123 tttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa 182  Q
    |||||||||||||| ||| ||| |||||||||||||||| |||||||||||| |||||||    
T  23591125 tttttctataatacaaattctgatgaaaccttagtctaa-atttttaaattttaatacaa 23591183  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 23591015 - 23591059
Alignment:
Q  68 taataaattttggaagttatcattattctccaaattcagaaagaa 112  Q
    ||||||||||||| |||||||||||| || |||||||||||||||    
T  23591015 taataaattttgggagttatcattatcctgcaaattcagaaagaa 23591059  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 22785 - 22826
Alignment:
Q  71 taaattttggaagttatcattattctccaaattcagaaagaa 112  Q
    |||||||||| |||||||||||| || |||||||||||||||    
T  22785 taaattttgggagttatcattatcctacaaattcagaaagaa 22826  T

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