View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_low_11 (Length: 345)
Name: NF8058_low_11
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 24377619 - 24377326
Alignment:
| Q |
17 |
atgaagcaatttagaattttaccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatct |
116 |
Q |
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| T |
24377619 |
atgaagcaatttagaattttaccagtccttttggcatgtccatcatcatcataagcaacagaagcagtcgttatttgtagagaattttgcttattcatct |
24377520 |
T |
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| Q |
117 |
ttatccaagcatatatatataactcaatggaagcttgagtttggtgcatatgatagaaaatcctgagctacaataataaagacaaattaacgagcaacga |
216 |
Q |
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| T |
24377519 |
ttatccaagcatatata----actcaatggaagtttgagtttgctgcatatgatagaaaatcctgagctacaataataaagacaaattaacgagcaacga |
24377424 |
T |
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| Q |
217 |
tgaagctcacaatgcaaatgatcttagttgcaatataaaattataggctatagta-----------gctaggatccttttcgagcaacgatgaagatc |
303 |
Q |
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| T |
24377423 |
tgaagctcacaatgcaaatgatcttagttgcaatataaaattataggctatagtaattatataggtgttaggatccttttcgagcaacgatgaagatc |
24377326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 24412885 - 24412796
Alignment:
| Q |
36 |
taccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
125 |
Q |
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| T |
24412885 |
taccagtcctttttgcatgtccatcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24412796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 24421156 - 24421245
Alignment:
| Q |
36 |
taccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
125 |
Q |
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| T |
24421156 |
taccagtcctttttgcatgtccatcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24421245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 24400451 - 24400410
Alignment:
| Q |
29 |
agaattttaccagtccttttggcatgtccatcatcatcataa |
70 |
Q |
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||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
24400451 |
agaattttacctgtccttttggcacgtccgtcatcatcataa |
24400410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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