View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_low_16 (Length: 307)
Name: NF8058_low_16
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 17348980 - 17348701
Alignment:
| Q |
1 |
aaatgaaagcgcttgaaaaaatggtacttgagagattgttgagcggaaaatagtcaaaatgtcagatagctgcacttttgtatatactataaagcacaaa |
100 |
Q |
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| T |
17348980 |
aaatgaaagcgcttgaaaaaatggtacttgagagattgttgagcggaaaatagtcaaaatgtcagttagctgcacttttgtatatactataaagcacaaa |
17348881 |
T |
|
| Q |
101 |
tcaaataacacccttgattgttacatgtcaagtctagtggaaaaa-ggttatactnnnnnnntataacattgattatgaggagacatttgcaccaatgac |
199 |
Q |
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| T |
17348880 |
tcaaataacacccttgattgttacatgtcaagtctagtggaaaaagggttatact-aaaaaatataacattgatcatgaggagacatttgcaccaatgat |
17348782 |
T |
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| Q |
200 |
ataaaacatgaatttaattcaaatcttacaatcttttgttgcttcatttgatgagaattgcaacaatgtgatattaaaaatg |
281 |
Q |
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| T |
17348781 |
at-aaacatgaatttaattcaaatcttacaatcttttgttgcttcatttgatgagaattgcattaatgtgatattaaaaatg |
17348701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 14792782 - 14792748
Alignment:
| Q |
166 |
acattgattatgaggagacatttgcaccaatgaca |
200 |
Q |
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| T |
14792782 |
acattgattatgaggagacatttgcaccaatgaca |
14792748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 15239772 - 15239738
Alignment:
| Q |
166 |
acattgattatgaggagacatttgcaccaatgaca |
200 |
Q |
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| T |
15239772 |
acattgattatgaggagacatttgcaccaatgaca |
15239738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 17539729 - 17539761
Alignment:
| Q |
166 |
acattgattatgaggagacatttgcaccaatga |
198 |
Q |
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| T |
17539729 |
acattgattatgaggagacatttgcaccaatga |
17539761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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