View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_low_2 (Length: 495)
Name: NF8058_low_2
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 48183274 - 48183752
Alignment:
| Q |
1 |
tagaacacgtagttcaaaggattttttgtcgcttatactaaatgctagagaatcaaaagctgtttcggaaaatgttttcacacctgaatatatcagtgct |
100 |
Q |
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| T |
48183274 |
tagaacacgtagttcaaaggattttttgtcgcttatcctaaatgctagagaatcaaaagctgtttcggaaaatgttttcacacctgaatatatcagtgct |
48183373 |
T |
|
| Q |
101 |
gttacttatgagcacttgcttgctggatcagcaaccacttcctttacattgtcttctgttgtatatttggttgctgcacatccagaagttgagaaaaaga |
200 |
Q |
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| T |
48183374 |
gttacttatgagcacttgcttgctggatcagcaaccacttcctttacattgtcttctgttgtatatttggttgctgcacatccagaagttgagaaaaaga |
48183473 |
T |
|
| Q |
201 |
tgcttgaagagattgatgggtatggttcactagatcagatacctacttcccaagatcttcatgacaagtttccttatcttgatcaggttagttaaactga |
300 |
Q |
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| T |
48183474 |
tgcttgaagagattgatgggtatggttcactagatcagatacctacttcccaagatcttcatgacaagtttccttatcttgatcaggttagttaaactga |
48183573 |
T |
|
| Q |
301 |
atgaacatcctgnnnnnnnttctgtatcgagtttaaatttgcaaaggctaagcgtataaatataaaatatattatactttggatttaattcatatacacc |
400 |
Q |
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| T |
48183574 |
atgaacatcctgaaaaaaattctgtatcgagtttaaatttgcaaaggctaagcgtataaatataaaatatattatactttggatttaattcatatacact |
48183673 |
T |
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| Q |
401 |
gtcggtataaagattttttgtacaatcaattaaaatcgtcagatcataaaaacgtttgaaagtaaacatgactacttct |
479 |
Q |
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| T |
48183674 |
gtcggcataaagattttttgcacaatcaattaaaatcgtcagatcataaaaacgtttgaaagtcaacatgactacttct |
48183752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 4090318 - 4090122
Alignment:
| Q |
95 |
agtgctgttacttatgagcacttgcttgctggatcagcaaccacttcctttacattgtcttctgttgtatatttggttgctgcacatccagaagttgaga |
194 |
Q |
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||||| ||||||||||| ||||| ||||| || || || ||||| || ||||||||||| ||| |||| ||||||||||||| |||||| | |||||| |
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| T |
4090318 |
agtgccgttacttatgaacacttacttgccggctcggctaccacatcttttacattgtcatctattgtttatttggttgctggtcatccaaatgttgagg |
4090219 |
T |
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| Q |
195 |
aaaagatgcttgaagagattgatgggtatggttcactagatcagatacctacttcccaagatcttcatgacaagtttccttatcttgatcaggttag |
291 |
Q |
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| T |
4090218 |
aaaaattgcttcaagagattgatggatttggtccacatgataagatacctaatgctaaagatctcaatgaaagttttccataccttgatcaggttag |
4090122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 38093789 - 38093863
Alignment:
| Q |
378 |
tttggatttaattcatatacaccgtcggtataaagattttttgtacaatcaattaaaatcgtcagatcataaaaa |
452 |
Q |
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||||||||||||| ||||||| |||||| |||| ||||||| |||||||||| ||||| |||| ||||| |||| |
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| T |
38093789 |
tttggatttaattaatatacaaagtcggtgtaaatattttttatacaatcaatcaaaattgtcaaatcattaaaa |
38093863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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