View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8058_low_22 (Length: 253)

Name: NF8058_low_22
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8058_low_22
NF8058_low_22
[»] chr3 (12 HSPs)
chr3 (12-237)||(50911940-50912165)
chr3 (12-237)||(38024946-38025171)
chr3 (12-237)||(38031398-38031623)
chr3 (12-237)||(55084628-55084855)
chr3 (12-209)||(38028837-38029034)
chr3 (12-191)||(50909850-50910029)
chr3 (12-209)||(38040152-38040349)
chr3 (12-176)||(38036864-38037028)
chr3 (12-105)||(38033850-38033943)
chr3 (12-103)||(50904863-50904954)
chr3 (12-141)||(38043843-38043972)
chr3 (12-102)||(48840782-48840872)
[»] chr8 (2 HSPs)
chr8 (12-237)||(21607367-21607592)
chr8 (12-209)||(21604825-21605022)
[»] chr4 (17 HSPs)
chr4 (12-103)||(17970277-17970368)
chr4 (12-125)||(27557445-27557558)
chr4 (12-102)||(27502878-27502968)
chr4 (12-104)||(27431219-27431311)
chr4 (23-99)||(27498397-27498473)
chr4 (12-115)||(27425778-27425881)
chr4 (42-97)||(27527145-27527200)
chr4 (12-102)||(27444865-27444955)
chr4 (12-100)||(27414375-27414463)
chr4 (45-125)||(27554265-27554345)
chr4 (12-112)||(27570120-27570220)
chr4 (23-97)||(27501301-27501375)
chr4 (23-112)||(27415593-27415679)
chr4 (12-97)||(27446131-27446216)
chr4 (23-100)||(27513858-27513935)
chr4 (12-97)||(27556450-27556535)
chr4 (23-112)||(27566033-27566122)
[»] chr2 (1 HSPs)
chr2 (12-103)||(3073547-3073638)
[»] chr5 (2 HSPs)
chr5 (12-98)||(1754312-1754398)
chr5 (23-102)||(1756839-1756918)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 50911940 - 50912165
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50911940 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 50912039  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagattt 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50912040 ttgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttctcagattt 50912139  T
Q  212 cagcaaaatctttctatatttgtttg 237  Q
    ||||||||||||||||||||||||||    
T  50912140 cagcaaaatctttctatatttgtttg 50912165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 38024946 - 38025171
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||||| |||    
T  38024946 tgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagctt 38025045  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagattt 211  Q
    | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  38025046 ttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccatttcaaatgttttgaagaaaaaactgaatttctcagattt 38025145  T
Q  212 cagcaaaatctttctatatttgtttg 237  Q
     || ||||| |||||| |||||||||    
T  38025146 aagaaaaatgtttctaaatttgtttg 38025171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 38031398 - 38031623
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||||| |||    
T  38031398 tgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagctt 38031497  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagattt 211  Q
    | |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||| || |||||    
T  38031498 ttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaatggaaacccatttcaaatgttttgatgaaaaaactgaatttctctgattt 38031597  T
Q  212 cagcaaaatctttctatatttgtttg 237  Q
     || ||||| |||||| |||||||||    
T  38031598 aagaaaaatgtttctaaatttgtttg 38031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 55084855 - 55084628
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    |||||||| | |||||||||||| ||| | |||||||||||||| ||||| || ||||||||||| || |||||| | || |||||||||||||||  ||    
T  55084855 tgaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagatt 55084756  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcaga 208  Q
    | ||||||| ||||||||| ||||||||||| | ||||||    ||||||||||||||| ||||||||||| ||||||| || || ||||||||||||||    
T  55084755 ttgatgatgtttggctacccgtaaatgaagtccttctaatagctgcaggtaaacggaaa-ccatttcaaatgttttgaataacaagctgaatttatcaga 55084657  T
Q  209 tttcagcaaaatctttctatatttgtttg 237  Q
    ||| || ||||  | |||| |||||||||    
T  55084656 tttaagaaaaaggtatctaaatttgtttg 55084628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 38028837 - 38029034
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||||||||||||||||||||||||| ||||||| ||||| || ||||| |  |||||||| || || |||||||||||||||||||||||||  ||||    
T  38028837 tgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatactt 38028936  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcaga 208  Q
    |   ||||| ||||||||   | |||||||  ||||||||    ||||||||||||||||||||||||||| |||||||||| ||  ||||||| |||||    
T  38028937 t---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttttgaagaacaagatgaatttctcaga 38029033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 50910029 - 50909850
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||   ||| |  ||||||||||| || |||||||| ||||||||||||||||  ||||    
T  50910029 tgaaatgaagcttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttggcacattcaatactt 50909930  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaa 191  Q
    |   ||||| ||||||||   ||||||||| |||||||||    || |||||||||||||||||||||||| |||||||||||    
T  50909929 t---tgatgtttggctactgctaaatgaagctcgtctaatagctgctggtaaacggaaacccatttcaaatgttttgaagaaa 50909850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 38040152 - 38040349
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||||||||||||||||||||||||| ||||||| ||||| || ||||| |  |||||||| || || |||||||||||||||||||||||||  ||||    
T  38040152 tgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatactt 38040251  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcaga 208  Q
    |   ||||| ||||||||   | |||||||  ||||||||    |||| |||||| ||||||||||||||| |||||| ||| ||  ||||||| |||||    
T  38040252 t---tgatgtttggctactgctgaatgaagcccgtctaatagctgcagataaacgaaaacccatttcaaatgttttgatgaacaagatgaatttctcaga 38040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 38036864 - 38037028
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||||||||||||||||||||||| | ||||||  |||||||||||||| |  |||||||| || || |||||||||||||||||||||||||  ||||    
T  38036864 tgaaatgaagcttggttcaagtatggcatggggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatactt 38036963  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttca 176  Q
    |    |||| ||||||||   |||| ||||  ||||||||    ||||||||||||||||||||||||    
T  38036964 t---ggatgtttggctactgctaaaggaagcccgtctaatagctgcaggtaaacggaaacccatttca 38037028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 38033850 - 38033943
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattca 105  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||  || || |||||||||||||||||||||||||    
T  38033850 tgaaatgaagcttggttcaagtatgacgtggggataacaaaccgcttcatttgctctccaatgtacactgcaagatagccctttggcacattca 38033943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 50904863 - 50904954
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 103  Q
    |||||||||| |||||||||||| ||| |  ||||||||||||| ||||| |  |||||||| || || |||||||| ||||||||||||||    
T  50904863 tgaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatt 50904954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 38043972 - 38043843
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||| |||| ||| |||||||||||| | |||||||||||||| ||||| |  |||||||  || || |||||||||| ||||||||||||    ||||    
T  38043972 tgaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttcatttcctctccaaagtacactgcaagatagctctttggcacatttgtgactt 38043873  T
Q  112 tcgatgatgcttggctacctgtaaatgaag 141  Q
    || |||||| |||||| | | |||||||||    
T  38043872 tcaatgatgtttggctgcttctaaatgaag 38043843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 48840782 - 48840872
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 102  Q
    |||||||| |||||||||||||||| | ||||||| ||||| || |||||||  ||||| || || |  |||||||| |||||||||||||    
T  48840782 tgaaatgaggcttggttcaagtatggcatggggattacaaatcgcttcatctcctctccgacgtacaatgcaagatatccctttggcacat 48840872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 21607367 - 21607592
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||| |||||| |||||||||||||| ||||||| |||||||| ||||| |  ||||||||||||||||||||||| |||||||| |||||||||||||    
T  21607367 tgaaaggaagctcggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttggtacattcacaactt 21607466  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagattt 211  Q
    | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||    
T  21607467 ttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccatttcaaatgttttgaagaaaaaactgaatttctctgattt 21607566  T
Q  212 cagcaaaatctttctatatttgtttg 237  Q
     || ||||| |||||| |||||||||    
T  21607567 aagaaaaatgtttctaaatttgtttg 21607592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 21604825 - 21605022
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    ||||||||||||||||||||||||||| ||||||| ||||| || ||||| |  ||||| || || || |||||||||||||||||||||||||  ||||    
T  21604825 tgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctcctacttacactgcaagatagccctttggcacattcaatactt 21604924  T
Q  112 tcgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcaga 208  Q
    |   ||||| ||||||||   | |||||||  ||||||||    ||||||||||||||||||||||||||| |||||||||| ||  ||||||| |||||    
T  21604925 t---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttttgaagaacaagatgaatttctcaga 21605021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 17970368 - 17970277
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 103  Q
    |||||||||| |||||||||||||||| | |||||||||||||| ||||| |  |||||||| || ||||||||||| ||||||||||||||    
T  17970368 tgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatt 17970277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 27557558 - 27557445
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    |||||||| | |||||| ||||||||| | |||||||||||||  ||||| |  |||||||||||||| |||||||| ||| ||||||||| |||| | |    
T  27557558 tgaaatgatggttggtttaagtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagatatccccttggcacatccacaccct 27557459  T
Q  112 tcgatgatgcttgg 125  Q
    | || |||||||||    
T  27557458 ttgaagatgcttgg 27557445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 27502878 - 27502968
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 102  Q
    |||||||||| ||| ||||| |||||| | || ||||||||||| |||||||| ||||| ||||| || |||||||| || ||||||||||    
T  27502878 tgaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctacataaacggcaagatatccttttggcacat 27502968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 27431219 - 27431311
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattc 104  Q
    |||||||| | |||||||||||||||  | |||||||||||||  ||||| |  || ||||||||||| |||| ||| |||||||||||||||    
T  27431219 tgaaatgacggttggttcaagtatgatattgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttggcacattc 27431311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 27498473 - 27498397
Alignment:
Q  23 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggca 99  Q
    |||||||||||||||  | ||||||||||| |||||||| |  |||||||||||||| || ||||| ||||||||||    
T  27498473 ttggttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttggca 27498397  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 27425881 - 27425778
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    |||||||| | |||||||||||||||  | ||||||||| |||| ||    || |||||||||||||| |||||||| ||||||||||| | |||| |||    
T  27425881 tgaaatgatggttggttcaagtatgatattgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttggcacgtccacagctt 27425782  T
Q  112 tcga 115  Q
    ||||    
T  27425781 tcga 27425778  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 27527200 - 27527145
Alignment:
Q  42 gggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 97  Q
    ||||||||||||||||||   || ||||||||||| ||||||||||||||||||||    
T  27527200 gggatcacaaaccgtttctgtttatctccaacatacaccgcaagatagccctttgg 27527145  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 27444865 - 27444955
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 102  Q
    |||||||| | |||| ||||||||||  | |||||||||||||  ||||| |  |||||||| ||||| |||||||| |||||||||||||    
T  27444865 tgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacat 27444955  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 27414375 - 27414463
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcac 100  Q
    |||||||| | |||||||||||||||    || |||||||||||| |||| || |||||||| || || ||||||||||| ||||||||    
T  27414375 tgaaatgagggttggttcaagtatgatacaggaatcacaaaccgtctcattttatctccaacgtagactgcaagatagccttttggcac 27414463  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 27554345 - 27554265
Alignment:
Q  45 atcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactttcgatgatgcttgg 125  Q
    ||||||||||| ||||| |  |||||||||||||| ||||| || ||||||||||||| |||  |||| || |||||||||    
T  27554345 atcacaaaccgcttcatttcctctccaacatatactgcaaggtatccctttggcacatccactccttttgaagatgcttgg 27554265  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 27570120 - 27570220
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactt 111  Q
    |||||||||| |||| | ||||||||   |||||||||| ||||  ||   || |||||||||||||| |||||||| ||||||||||||| |||| |||    
T  27570120 tgaaatgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagctt 27570219  T
Q  112 t 112  Q
    |    
T  27570220 t 27570220  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 27501375 - 27501301
Alignment:
Q  23 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 97  Q
    |||||| ||||||||  | |||||||||||||||||||| |  |||||||||||||| || ||| | ||||||||    
T  27501375 ttggtttaagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgctagacatccctttgg 27501301  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 27415679 - 27415593
Alignment:
Q  23 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtct-ccaacatataccgcaagatagccctttggcacattcacaacttt 112  Q
    |||||||||||||||  ||||||||||||| || ||    |||| | |||||||| || |||||||| ||||||||||||| |||||||||    
T  27415679 ttggttcaagtatgatatggggatcacaaatcgctt----ttgttttccaacatacactgcaagatatccctttggcacatccacaacttt 27415593  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 27446216 - 27446131
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 97  Q
    |||||||||| ||| |||||  ||||  | || |||||||| || ||||| || ||||||||||| |||||||||||||| |||||    
T  27446216 tgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgg 27446131  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 27513858 - 27513935
Alignment:
Q  23 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcac 100  Q
    |||||||||||||||  | |||||||||||||| ||||| || ||||| ||||| || || ||||| || ||||||||    
T  27513858 ttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttggcac 27513935  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 27556450 - 27556535
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 97  Q
    |||||||||| |||||||||  ||||  |||| |||||||| || ||||| || ||||||||||| || || |||||||| |||||    
T  27556450 tgaaatgaaggttggttcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgg 27556535  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 27566033 - 27566122
Alignment:
Q  23 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 112  Q
    |||||||| ||||||  ||||||||||||| || ||    || ||||||||||| || |||||||| ||||||||||| | |||||||||    
T  27566033 ttggttcaggtatgatatggggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttggcacgtccacaacttt 27566122  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 3073638 - 3073547
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 103  Q
    |||||||||| |||||||||||||||| | |||||||||||||| ||||| |  |||||||| || ||||||||||| ||||||||||||||    
T  3073638 tgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatt 3073547  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 1754312 - 1754398
Alignment:
Q  12 tgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggc 98  Q
    |||||||| | |||||||||||||||   ||||||||||||||| ||||| |  |||||||||||||| || ||||| || ||||||    
T  1754312 tgaaatgacgattggttcaagtatgatacggggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttggc 1754398  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 1756839 - 1756918
Alignment:
Q  23 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 102  Q
    |||||||||||||||  | |||||||||||||| |||   || ||||||||||  || ||||||||||||||||| ||||    
T  1756839 ttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttggtacat 1756918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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