View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_low_26 (Length: 241)
Name: NF8058_low_26
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3203838 - 3203614
Alignment:
| Q |
1 |
cgacacatgcatgcaaatcaaaatttaagcaggagcacatgccatcgtatcctatgtatgtgaatagtgtctaataacgccaccgtttgtgaacagcgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203838 |
cgacacatgcatgcaaatcaaaatttaagcaggagcacatgccatcgtatcctatgtatgtgaatagtgtctaataacgccaccgtttgtgaacagcgta |
3203739 |
T |
|
| Q |
101 |
cttcaccatgcaaagtaccttaatttatatatcttgaaatttctaacaagtaagatgttatgctagctgtgttatcgttaacacccatgtcaatcatttt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203738 |
cttcaccatgcaaagtaccttaatttatatatcttgaaatttttaacaagtaagatgctatgctagctgtgttatcgttaacacccatgtcaatcatttt |
3203639 |
T |
|
| Q |
201 |
ccctccacactatataacctaactg |
225 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
3203638 |
ccctccacactatataacttaactg |
3203614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 3209709 - 3209588
Alignment:
| Q |
103 |
tcaccatgcaaagtaccttaatttatatatcttgaaatttctaacaagtaagatgttatgctagctgtgttatcgttaacacccatgtcaatcattttcc |
202 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209709 |
tcaccatgcaa-gtaccttaatttatatatcttgaaatttctaacaagtaagatgctatgctagctgtgttatcgttaacacccatgtcaatcattttcc |
3209611 |
T |
|
| Q |
203 |
ctccacactatataacctaactg |
225 |
Q |
| |
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|||||||||||||||| |||||| |
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| T |
3209610 |
ctccacactatataacttaactg |
3209588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 3509014 - 3509045
Alignment:
| Q |
2 |
gacacatgcatgcaaatcaaaatttaagcagg |
33 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3509014 |
gacacatgcatgcaaatcaaaatttaagcagg |
3509045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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