View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_low_6 (Length: 409)
Name: NF8058_low_6
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_low_6 |
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| [»] scaffold0526 (1 HSPs) |
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Alignment Details
Target: scaffold0526 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 6627 - 6238
Alignment:
| Q |
1 |
caatatcaaaaacaaaaaggtgctttatcttgtctttttaatttttacgtatgcgttactttatatacaaaggccctcaaaatcctccgcaagataaaga |
100 |
Q |
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| T |
6627 |
caatatcaaaaacaaaaaggtgctttatcttgtcttttaaatttttacgtatgcggtactttatatacaaaggccctcaaaatcctccgcaagataaaga |
6528 |
T |
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| Q |
101 |
ctcatctcgacactcctcgttcaaaggccctcaaatcacaaatcgtagcttccttttgatgaaaaatataaaacaatcgtaggaattgattgcgaagaga |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
6527 |
ctcatctcgacactcctccttcaaaggccctcaaatcacatatggtagattccttttgaagaaatcaataaaacaatcgtaggaattgattgcgaagaga |
6428 |
T |
|
| Q |
201 |
tgcacttccaatccacctctctagcttaaaaactagttttcccatggaccaattattattgaccgctacatctaaagtacaaatgtttctcacaaacttg |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||| |
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| T |
6427 |
tgcacttccaatccacctctcgagcttaaaaactagttttcccatggacca---acccctgactgctacatctaaagtacaaatgtttctcaccaacttg |
6331 |
T |
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| Q |
301 |
atgcacaccattgaaaagattatcctcccaaatcactctattcaaaatccactccccatatttccccacaaacacttctttccacaacatacg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6330 |
atgcacaccattgaaaagattatcctcccaaatcactctactcaaaatccattccccatatttccccacaaacacttctttccacaacatacg |
6238 |
T |
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