View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_low_8 (Length: 380)
Name: NF8058_low_8
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 1018539 - 1018890
Alignment:
| Q |
18 |
catcacaaaacttgattttgtggcccagatcacagtcacagcccttgatctaacacgttggttcttaataccccaatcgtaagcatctcgcaaatcacaa |
117 |
Q |
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| T |
1018539 |
catcacaaaccttgattttgtggcccagatcacagtcacagcccttaatctaacacattggttcttaacaccccaatcgtaagcatctcgcaaatcacaa |
1018638 |
T |
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| Q |
118 |
gtcatctaattacaaaattttgccgggctgtaaattttaagcaccttttcctgactactaaactaccttttataataattgagttttcttgtgcaggata |
217 |
Q |
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| T |
1018639 |
gccatctaattacaaaattttgccgggctgtaaattttaagcaccttttcctgactactaaactaccttttataataattgagttttcttgtgcaggata |
1018738 |
T |
|
| Q |
218 |
actacctggtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaaga |
317 |
Q |
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| T |
1018739 |
actacctggtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaaga |
1018838 |
T |
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| Q |
318 |
aagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgc |
369 |
Q |
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| T |
1018839 |
aagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgc |
1018890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 1014159 - 1014279
Alignment:
| Q |
159 |
caccttttcctgactactaaactaccttttataataattgagttttc-ttgtgcaggataactacctggtaacctatgacaacaaaactaaatcttcaaa |
257 |
Q |
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| T |
1014159 |
caccttttcctacctactaaaccaccctttataataacttattattccttgcccagcttaactgcctagtaacctatgacaacaaaaccaaatcttcaaa |
1014258 |
T |
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| Q |
258 |
aagatcatttagatctaagtc |
278 |
Q |
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| T |
1014259 |
cagatcatttagatctaagtc |
1014279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 1010115 - 1010161
Alignment:
| Q |
232 |
tatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtc |
278 |
Q |
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| T |
1010115 |
tatgacaacaaaaccaaatctataaacagatcatttagatctaagtc |
1010161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 8317178 - 8317025
Alignment:
| Q |
217 |
aactacctggtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaag |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8317178 |
aactacctggtaacctatgacagcaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagcgctatcaaaacattatatggattcaaaag |
8317079 |
T |
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| Q |
317 |
aaagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgcg |
370 |
Q |
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| T |
8317078 |
aaagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgcg |
8317025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 8317338 - 8317171
Alignment:
| Q |
18 |
catcacaaaacttgattttgtggcccagatcacagtcacagcccttgatctaacacgttggttcttaataccccaatcgtaagcatctcgcaaatcacaa |
117 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8317338 |
catcacaaaccttgattttgtagcccagatcacagtcacagcccttaatctaacacattggttcttaatatcccaatcgtaagcatctcgcaaatcacaa |
8317239 |
T |
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| Q |
118 |
gtcatctaattacaaaattttgccgggctgtaaattttaagcaccttttcctgactactaaactacct |
185 |
Q |
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| T |
8317238 |
gtcatctaattacaaaattttgccgggcagtaaattttaagcaccttttcctgactactaaactacct |
8317171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 40638733 - 40638687
Alignment:
| Q |
226 |
gtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatc |
272 |
Q |
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|||||||||||||||||||| |||||| |||| |||||||||||||| |
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| T |
40638733 |
gtaacctatgacaacaaaaccaaatctccaaacagatcatttagatc |
40638687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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