View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8058_low_9 (Length: 373)
Name: NF8058_low_9
Description: NF8058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8058_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 42086766 - 42087098
Alignment:
| Q |
16 |
caaacattccaacatagaagaacatggtgcaattttcaagtccaaaaatccaaccattgagaactattgcatgattggtctaacataccacatggatcaa |
115 |
Q |
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| T |
42086766 |
caaacattgcaacatagaagaacatggtgcaattttcaagtccaaaaatccaaccattgagaactattgcatgattggtctaacataccacatggatcaa |
42086865 |
T |
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| Q |
116 |
cattgtaccatttttcaagtgttgttgtcaagggaatttctgcatgatcatcatttcttaaaagttgatttcctctgtcctcaactttctctgtccatgt |
215 |
Q |
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| T |
42086866 |
cattgtaccatttttcaagtgttgttgtcaagggaatttctgcatgatcatcatttcttaaaagttgatttcctctgtcctcaactttctctgtccatgt |
42086965 |
T |
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| Q |
216 |
tgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcatttgaaaaccttggctttgtttcttcaaacctgctattgttg |
315 |
Q |
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| T |
42086966 |
tgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcatttgaaaacctttgctttgtttcttcaaacctgctattgttg |
42087065 |
T |
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| Q |
316 |
tatccatttcctgaaccaccatcttctctgcta |
348 |
Q |
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|||||||||| |||||||||||||||| ||||| |
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| T |
42087066 |
tatccatttcttgaaccaccatcttctgtgcta |
42087098 |
T |
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