View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8059_high_5 (Length: 336)
Name: NF8059_high_5
Description: NF8059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8059_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 180 - 321
Target Start/End: Original strand, 33518815 - 33518956
Alignment:
| Q |
180 |
aaaaatcagtttgaaatgaactttagtagattacatcataaatgtgataatgcttacattgattttgtgcagtgtgtttgcattgctaagcctgcactta |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33518815 |
aaaaatcagtttgaaatgaactttagtagattacatcataaatgtgataatgcttacattgattttgtgcagtgtgtttgcattgctaagcctgcactta |
33518914 |
T |
|
| Q |
280 |
tttatgtatggatgtaatctatatatgtggaagagaacaaga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33518915 |
tttatgtatggatgtaatctatatatgtggaagagaacaaga |
33518956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 33518691 - 33518818
Alignment:
| Q |
19 |
gttgtctactggttgttttgtgtcattgttttgtgtatacgcaattttggctcatttgtgcgctatattctctcctagcaatgagtcagcttatatgcaa |
118 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33518691 |
gttgtctacaggttgttttgtttcattgttttgtgtatacgcaattttggctcatttgtgcgccatattctctcctagcaatgagtcagcttatatgcaa |
33518790 |
T |
|
| Q |
119 |
aatgtctatcctgttttcaggtacaaaa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33518791 |
aatgtctatcctgttttcaggtacaaaa |
33518818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 15640378 - 15640263
Alignment:
| Q |
29 |
ggttgttttgtgtcattgttttgtgtatacgcaattttggctcatttgtgcgctatattctctcctagcaatgagtcagcttatatgcaaaatgtctatc |
128 |
Q |
| |
|
||||||||||| || |||||||| ||||| ||||| ||||| || ||||| | |||||||||||||| || || ||||||||||| || ||||| | |
|
|
| T |
15640378 |
ggttgttttgtatctttgttttgcgtatatgcaatcttggcccacttgtgtggtatattctctcctaacacagaaccagcttatatggaagcagtctacc |
15640279 |
T |
|
| Q |
129 |
ctgttttcaggtacaa |
144 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
15640278 |
ctgttttcaggtacaa |
15640263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University