View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8059_high_6 (Length: 335)
Name: NF8059_high_6
Description: NF8059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8059_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 26971258 - 26970932
Alignment:
| Q |
5 |
ttattctattttggaaacatcttcaagcacttataattagagaagtattagaatgactgtactgtattcaagctttttgatttaaggttaatagtattct |
104 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26971258 |
ttattctatttttgaaacatcttcaagcacttataattagagaagtattagaatgactgtactgtattcaagctttttgatttaatgttaatagtattct |
26971159 |
T |
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| Q |
105 |
gtacttcattatatccctcttcaaataattttttgacaga--------agtacattagtttttatagtattttctcatctaccaaaaattaaataccaaa |
196 |
Q |
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|||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26971158 |
gtacttcattatatccctcttcaaataactttttgccagacaaatattagtacattagtttttatagtattttctcatctaccaaaagttaaataccaaa |
26971059 |
T |
|
| Q |
197 |
gtttgaattcaaatcatttacttttatcttaatctagttgaactatttaacccttattttttcgataagtttaattagtattgttttttctaccatagcc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26971058 |
gtttgaattcaaatcatttacttttatcttaatctagttgaactatttaacccttattttttcgataagtttaattagtattgtgttttctaccatagcc |
26970959 |
T |
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| Q |
297 |
tatcatttcctatactaaatacaaaat |
323 |
Q |
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||||||||||||||||||||||||||| |
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| T |
26970958 |
tatcatttcctatactaaatacaaaat |
26970932 |
T |
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