View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8059_high_9 (Length: 316)
Name: NF8059_high_9
Description: NF8059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8059_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 145 - 301
Target Start/End: Complemental strand, 15135916 - 15135760
Alignment:
| Q |
145 |
tacctttaaaattagagagttttcatgtcttcttcaagagagaaaatagcaacttgaattaaaaccgttgttttgcatttgtgtagcaaaaaagcacaaa |
244 |
Q |
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| T |
15135916 |
tacctttaaaattaatgagttttcatgtcttcttcaagagagaaaatagcaacttgaattaaaaccgttgttttgcatttgtgtagcaaaaaagcacaaa |
15135817 |
T |
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| Q |
245 |
catcaccaaatttcaaattattgtgagcacagaattcactccaaccacttgttagtg |
301 |
Q |
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| T |
15135816 |
catcaccaaatttcaaattattgtgagcacagaattcactccaaccacttgttagtg |
15135760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 15136048 - 15136000
Alignment:
| Q |
13 |
aatattgcatgtgttgtgttcatacgaagattctagagaggaaagagac |
61 |
Q |
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| T |
15136048 |
aatattgcatgtgttgtgttcatatgaagattctagagaggaaagagac |
15136000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 301
Target Start/End: Original strand, 12965302 - 12965442
Alignment:
| Q |
161 |
gagttttcatgtcttcttcaagagagaaaatagcaacttgaattaaaaccgttgttttgcatttgtgtagcaaaaaagcacaaacatcaccaaatttcaa |
260 |
Q |
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| T |
12965302 |
gagttttcatgtccttttccaaagagaaaataacaacttgaaatgaaactgtttctttgcctttgtttagcacaaaaacacaaacatcaccaaatttcaa |
12965401 |
T |
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| Q |
261 |
attattgtgagcacagaattcactccaaccacttgttagtg |
301 |
Q |
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| T |
12965402 |
attattctcttcacggaattctctccaaccacaagttagtg |
12965442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 12867869 - 12867793
Alignment:
| Q |
216 |
tttgcatttgtgtagcaaaaaagcacaaacatcaccaaatttcaaattattgtgagcacagaattcactccaaccac |
292 |
Q |
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| T |
12867869 |
tttgcatttgtttagcataaaaacacttatatcaccaaatttcaaattattgtgagctcgaaatttactccaaccac |
12867793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 49744231 - 49744106
Alignment:
| Q |
167 |
tcatgtcttcttcaagagagaaaatagcaacttgaattaaaaccgttgttttgcatttgtgtagcaaaaaagcacaaacatcaccaaatttcaaattatt |
266 |
Q |
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| T |
49744231 |
tcatgtctttttctagagagaaaatcttaacttggaatgaaactgttcctttgcatttgttcagcataaaaacacagatatcaccaaacttcaaattatt |
49744132 |
T |
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| Q |
267 |
gtgagcacagaattcactccaaccac |
292 |
Q |
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| T |
49744131 |
gtgagcacgaaatttactccaaccac |
49744106 |
T |
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