View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8059_low_1 (Length: 467)
Name: NF8059_low_1
Description: NF8059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8059_low_1 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 123 - 467
Target Start/End: Complemental strand, 28976307 - 28975963
Alignment:
| Q |
123 |
ggagccgtcaggtatgctagggtttctagcaccatgagcctcctttagaattcatcaatttccaatcggtgggaatgatttggaatatacattttaagca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28976307 |
ggagccgtcaggtatgctagggtttctagcaccatgagcctcctttagaattcatcaatttccaatcggtgggaatgatttggaatatacattttaagca |
28976208 |
T |
|
| Q |
223 |
attttccatacaaattaagcaatcggtggcagacttcaacaaattcatcattaggtgctacttctttcggtgctttttgctttgttgatttgtgtcgaaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28976207 |
attttccatacaaattaagcaatcggtggcagacttcaacaaattcatcattaggtgctagttctttcggtgctttttgctttgttgatttgtgtcgaaa |
28976108 |
T |
|
| Q |
323 |
aatcaatttggaatattcacataagcaactttgccatccaattctgttgattgaagttacgtgatttgattgatcacttacggacagattttctgctatg |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28976107 |
aatcaatttggaatattcacataagcaactttgccatccaattctgttgattgaagttacgtgatttgattgatcacttacggacagactttctgctatg |
28976008 |
T |
|
| Q |
423 |
ccgttcgactagcaggcagagttattattgccggcagctgcatcc |
467 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28976007 |
ccgttcgactagcaggcagagttgttattgccggcagctgcatcc |
28975963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 33066888 - 33066807
Alignment:
| Q |
383 |
gtgatttgattgatcacttacggacagattttctgctatgccgttcgactagcaggcagagttattattgccggcagctgca |
464 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||||| ||||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
33066888 |
gtgatttgattgatcacttacggacatactttctactatgtcgttcgactggcaggcagagttgttattgccgacagctgca |
33066807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 21493806 - 21493753
Alignment:
| Q |
411 |
ttttctgctatgccgttcgactagcaggcagagttattattgccggcagctgca |
464 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| | ||||||| |||||||| |
|
|
| T |
21493806 |
ttttctgccatgccgttcgactggcaggcagagttttcattgccgacagctgca |
21493753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 10304894 - 10304843
Alignment:
| Q |
412 |
tttctgctatgccgttcgactagcaggcagagttattattgccggcagctgc |
463 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||| ||||||||| ||||||| |
|
|
| T |
10304894 |
tttctgctaggccgttcgattggcaggcagagttgttattgccgacagctgc |
10304843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University