View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8059_low_2 (Length: 414)
Name: NF8059_low_2
Description: NF8059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8059_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 39316410 - 39316796
Alignment:
| Q |
17 |
actacatgcttattttcactccaattatgttatttgaacatcagaattagccaccagatgtgtttatctatctctcttaatttatattttctacaacttg |
116 |
Q |
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| T |
39316410 |
actacatgcttattttcactccaattatgttatttgaacatcagaattagccaccagatgtgtttatctatctctcttaatttatattttctacaacttg |
39316509 |
T |
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| Q |
117 |
cacagattccaaaatatacacgaaaacgaaaggacactgtactcgacgacaaaattttaatgtcaacaaatcatatctcttttcactatctgacatatat |
216 |
Q |
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| T |
39316510 |
cacagattccaaaatatacacgaaaacgaaaggacaccgtactcgacgacaaaattttaatgtcaacaaatcatatctcttttcactatctgacatatat |
39316609 |
T |
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| Q |
217 |
gaatgcatacacacaaataaacaattaaggactagtttgttttgataatatgaaatgtatctaattgtagcttggagatatggtacaatcaaggactagt |
316 |
Q |
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| T |
39316610 |
gaatgcatacacacaaataaacaattaaggactagtttgttttgataatatgaaatgtatctaattgtagcttggagatatggtacaatcaaggactagt |
39316709 |
T |
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| Q |
317 |
actcatagcagggctgctatctaatcccacagtggcactggattctatttccatttggtatgttaacaatttctcttagaataatgt |
403 |
Q |
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| T |
39316710 |
actcatatcagggctgctatctaatcccacagtggcactggattctatttccatttggtatgttaacaatttctcttagaataatgt |
39316796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 403
Target Start/End: Complemental strand, 38136500 - 38136348
Alignment:
| Q |
246 |
gactagtttgttttgataatatgaaatgtatctaattgtagcttggagatatggtacaatcaaggactagtactcatagcagggctgctatctaatccca |
345 |
Q |
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| T |
38136500 |
gactagtttgttttgataatctg-----tatctttttgtagcttggagatatggtacaatcagggacttgtgctcatatcagggctgctccccaatccca |
38136406 |
T |
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| Q |
346 |
cagtggcactggattctatttccatttggtatgttaacaatttctcttagaataatgt |
403 |
Q |
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| T |
38136405 |
ctgtggcactggattctatttccatttggtatgttaacaatttctctttgaataatgt |
38136348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 39312205 - 39312337
Alignment:
| Q |
267 |
tgaaatgtatctaattgtagcttggagatatggtacaatcaaggactagtactcatagcagggctgctatctaatcccacagtggcactggattctattt |
366 |
Q |
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| T |
39312205 |
tgaaatttttcttattgtagcttggatatatgttacaatcagggactattgcttgtttcaggcctgctatctaatcccacagtggcactagattctattt |
39312304 |
T |
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| Q |
367 |
ccatttggtatgttaacaatttctcttagaata |
399 |
Q |
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| T |
39312305 |
ccatttggtatgttaacaatttctcttagaata |
39312337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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