View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8059_low_4 (Length: 362)

Name: NF8059_low_4
Description: NF8059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8059_low_4
NF8059_low_4
[»] chr8 (26 HSPs)
chr8 (38-345)||(27888941-27889247)
chr8 (38-345)||(27947599-27947905)
chr8 (1-161)||(31207005-31207165)
chr8 (10-161)||(12897928-12898079)
chr8 (1-161)||(20138704-20138864)
chr8 (4-161)||(32065931-32066087)
chr8 (1-156)||(22773904-22774059)
chr8 (1-161)||(36631101-36631260)
chr8 (1-156)||(24995038-24995193)
chr8 (1-156)||(9519789-9519944)
chr8 (11-156)||(37986508-37986653)
chr8 (177-288)||(27970589-27970700)
chr8 (177-288)||(28027858-28027969)
chr8 (12-159)||(15821031-15821177)
chr8 (199-329)||(27865233-27865363)
chr8 (1-159)||(35815887-35816045)
chr8 (1-154)||(16457118-16457270)
chr8 (1-161)||(35821534-35821692)
chr8 (1-148)||(3584028-3584176)
chr8 (62-161)||(34388711-34388810)
chr8 (13-152)||(38577441-38577580)
chr8 (12-100)||(13538324-13538412)
chr8 (12-100)||(13686062-13686150)
chr8 (13-160)||(41893058-41893206)
chr8 (1-67)||(9659474-9659540)
chr8 (1-47)||(34866303-34866349)
[»] chr1 (15 HSPs)
chr1 (1-161)||(30685567-30685727)
chr1 (1-156)||(31584683-31584837)
chr1 (1-159)||(46814108-46814266)
chr1 (1-161)||(24684136-24684295)
chr1 (11-153)||(24449584-24449725)
chr1 (1-160)||(7002468-7002625)
chr1 (1-145)||(40216149-40216293)
chr1 (1-151)||(6804825-6804975)
chr1 (12-161)||(5459438-5459582)
chr1 (1-161)||(5389071-5389226)
chr1 (13-161)||(41920735-41920883)
chr1 (1-152)||(24659217-24659357)
chr1 (58-161)||(46692519-46692623)
chr1 (13-152)||(27031496-27031633)
chr1 (1-104)||(14320658-14320761)
[»] chr7 (23 HSPs)
chr7 (1-161)||(31971778-31971938)
chr7 (1-160)||(5859926-5860085)
chr7 (1-161)||(44353207-44353367)
chr7 (1-161)||(10244458-10244618)
chr7 (1-156)||(47325528-47325682)
chr7 (1-153)||(33434474-33434626)
chr7 (1-158)||(3419042-3419197)
chr7 (10-161)||(37795274-37795425)
chr7 (10-161)||(37795602-37795753)
chr7 (1-160)||(25161088-25161246)
chr7 (1-152)||(34391469-34391620)
chr7 (12-160)||(42454388-42454536)
chr7 (21-158)||(3419321-3419456)
chr7 (43-161)||(38306538-38306656)
chr7 (1-161)||(41089389-41089546)
chr7 (1-161)||(3867393-3867552)
chr7 (1-161)||(40726134-40726308)
chr7 (1-146)||(6585179-6585324)
chr7 (12-161)||(43482183-43482331)
chr7 (10-104)||(11378773-11378866)
chr7 (1-126)||(48161684-48161808)
chr7 (1-159)||(35745475-35745621)
chr7 (13-72)||(31756325-31756384)
[»] chr3 (27 HSPs)
chr3 (1-160)||(2392146-2392305)
chr3 (1-160)||(2393909-2394068)
chr3 (12-160)||(47235977-47236125)
chr3 (1-161)||(19176784-19176944)
chr3 (1-161)||(45164132-45164291)
chr3 (1-161)||(34475401-34475561)
chr3 (1-161)||(31483158-31483318)
chr3 (13-159)||(40023224-40023370)
chr3 (34-149)||(30352115-30352230)
chr3 (1-161)||(53248178-53248338)
chr3 (1-160)||(17551236-17551395)
chr3 (1-152)||(21343635-21343785)
chr3 (15-148)||(9583710-9583843)
chr3 (37-161)||(43012655-43012779)
chr3 (12-152)||(50305228-50305368)
chr3 (1-152)||(23327991-23328142)
chr3 (1-125)||(37158618-37158743)
chr3 (13-124)||(50559959-50560070)
chr3 (1-105)||(45399119-45399223)
chr3 (1-104)||(4463728-4463831)
chr3 (2-102)||(25506714-25506814)
chr3 (236-329)||(39676669-39676762)
chr3 (1-70)||(47439284-47439353)
chr3 (120-152)||(45399086-45399118)
chr3 (13-63)||(39020997-39021046)
chr3 (107-160)||(7105122-7105175)
chr3 (115-159)||(39021050-39021093)
[»] chr4 (19 HSPs)
chr4 (2-161)||(27555574-27555734)
chr4 (13-161)||(30964715-30964863)
chr4 (1-161)||(8255305-8255465)
chr4 (1-161)||(8268723-8268883)
chr4 (1-144)||(35329302-35329445)
chr4 (1-161)||(36689448-36689608)
chr4 (1-161)||(30167206-30167368)
chr4 (23-156)||(20464872-20465005)
chr4 (1-161)||(8705783-8705939)
chr4 (10-144)||(11281377-11281511)
chr4 (1-152)||(4305994-4306142)
chr4 (1-108)||(7703018-7703124)
chr4 (12-152)||(2826071-2826208)
chr4 (12-152)||(31050315-31050453)
chr4 (1-104)||(46698422-46698525)
chr4 (13-150)||(35341006-35341143)
chr4 (1-90)||(9750116-9750204)
chr4 (11-104)||(49528421-49528514)
chr4 (13-105)||(52868766-52868859)
[»] chr6 (8 HSPs)
chr6 (1-161)||(3254235-3254395)
chr6 (1-161)||(15944277-15944437)
chr6 (1-161)||(10542109-10542268)
chr6 (1-156)||(3117777-3117932)
chr6 (105-161)||(14663358-14663414)
chr6 (12-91)||(15132494-15132573)
chr6 (49-104)||(33697788-33697843)
chr6 (12-73)||(14663421-14663480)
[»] chr2 (23 HSPs)
chr2 (1-161)||(39338504-39338665)
chr2 (1-161)||(387454-387614)
chr2 (13-156)||(41877207-41877350)
chr2 (1-161)||(10524376-10524535)
chr2 (12-152)||(14436921-14437059)
chr2 (12-152)||(5254540-5254679)
chr2 (1-152)||(14106166-14106314)
chr2 (17-160)||(22888552-22888694)
chr2 (1-152)||(14405487-14405636)
chr2 (23-160)||(17116553-17116680)
chr2 (1-102)||(43816090-43816191)
chr2 (14-103)||(13512495-13512584)
chr2 (10-84)||(15457817-15457891)
chr2 (1-133)||(7874582-7874715)
chr2 (1-104)||(3745676-3745779)
chr2 (1-152)||(7460965-7461113)
chr2 (10-104)||(45311456-45311550)
chr2 (1-74)||(9823694-9823767)
chr2 (81-154)||(25281022-25281095)
chr2 (13-154)||(43248882-43249017)
chr2 (14-67)||(25280971-25281024)
chr2 (100-160)||(25281085-25281145)
chr2 (14-90)||(7455601-7455676)
[»] chr5 (12 HSPs)
chr5 (1-161)||(18593520-18593680)
chr5 (1-156)||(34378382-34378537)
chr5 (1-161)||(7161657-7161817)
chr5 (44-161)||(29087756-29087873)
chr5 (14-161)||(5656749-5656896)
chr5 (1-148)||(698658-698805)
chr5 (1-132)||(7452895-7453026)
chr5 (1-161)||(18313297-18313447)
chr5 (1-100)||(18255093-18255192)
chr5 (58-109)||(41250893-41250944)
chr5 (123-161)||(18255189-18255227)
chr5 (104-161)||(8297751-8297811)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-160)||(48614-48773)
[»] scaffold0434 (1 HSPs)
scaffold0434 (29-161)||(2344-2476)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-161)||(19196-19356)
[»] scaffold0343 (1 HSPs)
scaffold0343 (13-154)||(5989-6131)
[»] scaffold0068 (1 HSPs)
scaffold0068 (10-60)||(35476-35526)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 38 - 345
Target Start/End: Complemental strand, 27889247 - 27888941
Alignment:
Q  38 caagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaa 137  Q
    ||||||||||| ||| |||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||    
T  27889247 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27889148  T
Q  138 cacatcaccacctaaaacagactcnnnnnnnccaagcactgtaacttgcgtgggtaatttctcaagtgtaaccaaaaaactaactaatatattgcattga 237  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27889147 cacatcaccacctaaaacagact-aaaaaaaccaagcactgtaacttgcgtgggtaatttctcaagtgtaaccaaaaaactaactaatatattgcattga 27889049  T
Q  238 tgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatcttgaatgttgataacttctcaaatgaaaccaatttgaaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27889048 tgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatcttgaatgttgataacttctcaaatgaaaccaatttgaaa 27888949  T
Q  338 ttctcttg 345  Q
    ||||||||    
T  27888948 ttctcttg 27888941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 38 - 345
Target Start/End: Complemental strand, 27947905 - 27947599
Alignment:
Q  38 caagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaa 137  Q
    ||||||||||| ||| |||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||    
T  27947905 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27947806  T
Q  138 cacatcaccacctaaaacagactcnnnnnnnccaagcactgtaacttgcgtgggtaatttctcaagtgtaaccaaaaaactaactaatatattgcattga 237  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27947805 cacatcaccacctaaaacagact-aaaaaaaccaagcactgtaacttgcgtgggtaatttctcaagtgtaaccaaaaaactaactaatatattgcattga 27947707  T
Q  238 tgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatcttgaatgttgataacttctcaaatgaaaccaatttgaaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27947706 tgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatcttgaatgttgataacttctcaaatgaaaccaatttgaaa 27947607  T
Q  338 ttctcttg 345  Q
    ||||||||    
T  27947606 ttctcttg 27947599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 31207005 - 31207165
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  31207005 ttttttaatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataa 31207104  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31207105 ccacctaaaaacactcctgaagataaactcaccaaaacacatcaccacctaaaacagactc 31207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 12897928 - 12898079
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaa 109  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||    
T  12897928 cggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacctaaa 12898027  T
Q  110 aacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12898028 aacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactc 12898079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 20138864 - 20138704
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| | ||||||||| | ||||||||||||    
T  20138864 ttttttaatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataa 20138765  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  20138764 ccacctaaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactc 20138704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 32065931 - 32066087
Alignment:
Q  4 tttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataacca 103  Q
    ||||| ||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||| | ||||||||| ||||||||| |||||||    
T  32065931 tttaatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacac-ataacca 32066029  T
Q  104 cctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32066030 cctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactc 32066087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 22774059 - 22773904
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||| ||||||||||||||    
T  22774059 ttttttaatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataa 22773960  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    ||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  22773959 ccatctaaaaacaccagtgaagataaacccaccaaaacatatcaccacctaaaaca 22773904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 36631260 - 36631101
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||| ||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||||||||| | ||||||||| ||||||||||||||    
T  36631260 ttttttaatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataa 36631162  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36631161 tcacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 36631101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 24995038 - 24995193
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | |||||||||||| |||| |||||||| |||||||||| |||||||||||||||||||||||| | |||| |||| || |||||||||||    
T  24995038 ttttttaatcagcaaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataa 24995137  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  24995138 ccacctaaaaacacccctgaagataaacccaccaaaacatgtcaccacctaaaaca 24995193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9519944 - 9519789
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| || |||||||||||||||  ||||||  ||||||||||| |||||||||||||||||||||||| | ||||||||| || ||||| |||||    
T  9519944 ttttttaatcgacaaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataa 9519845  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9519844 ccacctaaaaacacccctgatgataaacccaccaaaacacgtcaccacctaaaaca 9519789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 37986508 - 37986653
Alignment:
Q  11 ggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaa 110  Q
    |||||||||||||||| | |||||||||||||||||||  | ||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||    
T  37986508 ggcaaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaa 37986607  T
Q  111 acacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||    
T  37986608 acacccctaaagataaacccattaaaacacatcaccacctaaaaca 37986653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 27970700 - 27970589
Alignment:
Q  177 tgtaacttgcgtgggtaatttctcaagtgtaaccaaaaaactaactaatatattgcattgatgacaagtgtcataaaccacctaaaaacttctttgacaa 276  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27970700 tgtaacttgctagggtaatttctcaagtgtaacaaaaaaactaactaatatattgcattgatgacaagtgtcataaaccacctaaaaacttcttcgacaa 27970601  T
Q  277 gctccttccaat 288  Q
    ||||||||||||    
T  27970600 gctccttccaat 27970589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 28027969 - 28027858
Alignment:
Q  177 tgtaacttgcgtgggtaatttctcaagtgtaaccaaaaaactaactaatatattgcattgatgacaagtgtcataaaccacctaaaaacttctttgacaa 276  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28027969 tgtaacttgctagggtaatttctcaagtgtaacaaaaaaactaactaatatattgcattgatgacaagtgtcataaaccacctaaaaacttcttcgacaa 28027870  T
Q  277 gctccttccaat 288  Q
    ||||||||||||    
T  28027869 gctccttccaat 28027858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 15821031 - 15821177
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||| |||||  |||||||||||| |||||||| ||||||||||||||| | ||||||||| |||||| |||||||||||| || ||    
T  15821031 gcaaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccaccaaataa 15821129  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaaaacagac 159  Q
     ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  15821130 aacccctgaagataaaaccaccaaaacacatcaccacctaagacagac 15821177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 27865363 - 27865233
Alignment:
Q  199 tcaagtgtaaccaaaaaactaactaatatattgcattgatgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatc 298  Q
    |||||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| || |||||||||    
T  27865363 tcaagtgttaacaaaaaactaactaatatgttgcattgatgacaattgtcataaaccacctaaaaacttctttgacaagtttcttccgatgttttgaatc 27865264  T
Q  299 ttgaatgttgataacttctcaaatgaaacca 329  Q
    |||||| |||||||||||| || ||||||||    
T  27865263 ttgaattttgataacttctaaagtgaaacca 27865233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35815887 - 35816045
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||| | || |||||| ||||||||||||||    
T  35815887 ttttttaaacggcaaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataa 35815986  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagac 159  Q
    || || || ||  ||| ||||||||||||||||||||| ||||||||| ||| ||||||    
T  35815987 cccccaaacaaagcccatgaagataaacccaccaaaacccatcaccacttaagacagac 35816045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 16457118 - 16457270
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||||||  |||||||||||||||||| |||||| |||||||| ||| |||||||||||||||||||||||| | || |||||| ||||||||||||||    
T  16457118 ttttttaataggcaaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataa 16457217  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaa 154  Q
    ||||||||||| | || ||| ||||| | |||||||||||||||||||||||||    
T  16457218 ccacctaaaaa-atccttgaggataatcgcaccaaaacacatcaccacctaaaa 16457270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 35821692 - 35821534
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||| | ||||||||||||||||||| |||| ||||||||||||||  |||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  35821692 tttttttatcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataa 35821594  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||| |||||| ||| |||| ||||| | |||||||  |||||||||||||||||||||||    
T  35821593 ccacttaaaaa-acctctgaggataatctcaccaaactacatcaccacctaaaacagactc 35821534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 3584176 - 3584028
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaa-gatacaaatgataccgcatataaacggtacaccata 99  Q
    |||||||| | ||||||||||||||||| ||||||| |||||||| || |||| ||||||||| |||||||||| | ||||||||| |||||||||||||    
T  3584176 ttttttaatcagcaaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccata 3584077  T
Q  100 accacctaaaaacacccctgaagataaacccaccaaaacacatcaccac 148  Q
    |||||| || ||  ||||| |||||||||||||||| ||||||||||||    
T  3584076 accaccaaacaaagccccttaagataaacccaccaacacacatcaccac 3584028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 34388711 - 34388810
Alignment:
Q  62 aagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||  | | ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaaaacacccgtgaagataaacccagcaaaacacatcaccacctaaaacaaactc 34388810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 38577441 - 38577580
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||| |||  |||||||| | ||  |||| ||||||||| ||||||||||| ||||||||| ||||||||  ||||| ||| || ||     
T  38577441 caaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatatagacggtacaaaataactaccaaacaaa 38577540  T
Q  113 acccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    |  | |||||||||||||||||||||||||||||||||||    
T  38577541 atacatgaagataaacccaccaaaacacatcaccacctaa 38577580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 13538412 - 13538324
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||||||||||||||| |||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||| |||||||| |||||    
T  13538412 gcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 13686062 - 13686150
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||||||||||||||| |||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||| |||||||| |||||    
T  13686062 gcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 41893058 - 41893206
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacg---caagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaa 109  Q
    |||||||||||||||| | |||||  |||| |   |||| |||| |||||| || ||||||||| |  |||||||| |||||||||||||||||||||||    
T  41893058 caaatattattaaacgtcgtccccataagatgtcacaaggtatgaacgaaaaaa-atacaaatggtgtcgcatatagacggtacaccataaccacctaaa 41893156  T
Q  110 aacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    || | ||| || |||||| ||||||||||||||||| ||||||||||||||    
T  41893157 aaaaaccc-gaggataaatccaccaaaacacatcactacctaaaacagact 41893206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9659540 - 9659474
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagata 67  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  9659540 tttttgaatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34866303 - 34866349
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaa 47  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  34866303 ttttttaatcggcaaatattattaaacgtcatccccgcaagacgcaa 34866349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30685567 - 30685727
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| | ||||||||||||    
T  30685567 ttttttaatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataa 30685666  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30685667 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 30685727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 31584683 - 31584837
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||||  ||||| ||||||||||||| |||| ||||||||||||||||||| | ||||||||| ||| ||||||||||    
T  31584683 tttttgaatcggcaaatattattaaacaccatcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcatatagacgatacaccataa 31584781  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  31584782 ccacctaaaaacacccctgaagataaacccaccaaaacatgtcaccacctaaaaca 31584837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 46814108 - 46814266
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | | ||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  46814108 ttttttaatcagtaaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 46814207  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagac 159  Q
    ||||| || ||  |||||||||||||||| |||||||||||||||||||||| ||||||    
T  46814208 ccaccaaacaaagcccctgaagataaacctaccaaaacacatcaccacctaagacagac 46814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24684136 - 24684295
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||| | | |||||| |||||| ||||| |||| || |||||||||||||||| | || |||||| ||||||||||||||    
T  24684136 tttttgaatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacatatagacggtacaccataa 24684234  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24684235 tcacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactc 24684295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 24449584 - 24449725
Alignment:
Q  11 ggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaa 110  Q
    |||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||| | | ||||||| |||||||||||||||||| |||||    
T  24449584 ggcaaatattattaaacgccatccc-gcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacataaaa 24449682  T
Q  111 acacccctgaagataaacccaccaaaacacatcaccacctaaa 153  Q
    ||||||||  |||||||| ||||||||||||||||||||||||    
T  24449683 acacccctagagataaacacaccaaaacacatcaccacctaaa 24449725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 7002625 - 7002468
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||| ||||| | | ||| |||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  7002625 ttttttaatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataa 7002526  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    |||| |||||  | ||||  |||||||||||||||||||||||||||||||||| |||||    
T  7002525 ccacttaaaa--aaccctagagataaacccaccaaaacacatcaccacctaaaatagact 7002468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 40216149 - 40216293
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||||||||| | ||||||||| |||||||| |||||    
T  40216149 ttttttaatcagcaaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataa 40216248  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcac 145  Q
    ||||||||||||||  ||| |||| |||||||| |||||||||||    
T  40216249 ccacctaaaaacacatctggagattaacccaccgaaacacatcac 40216293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 6804975 - 6804825
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||| |||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||| | ||||||||| ||||||||||||||    
T  6804975 ttttttaatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataa 6804877  T
Q  101 ccacct-aaaaacacccctgaagataaacccaccaaaacacatcaccaccta 151  Q
    |||||| ||||| | ||| || ||||| ||||||||||||||||||||||||    
T  6804876 ccacctaaaaaaaaaccccgaggataatcccaccaaaacacatcaccaccta 6804825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 5459582 - 5459438
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    |||||||||||||||||     ||||||| ||||||| |||||||||| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  5459582 gcaaatattattaaacg-----cccgcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 5459488  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
     |||||||||||||||| |||||||||||||||| || ||||||| ||||    
T  5459487 tacccctgaagataaactcaccaaaacacatcactacttaaaacaaactc 5459438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 5389071 - 5389226
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||| ||||||||||||||| |||||||     ||||||| ||||||||||| |||||||||||| | ||||||||| |||| |||| ||||    
T  5389071 tttttgaatcggaaaatattattaaacgccatcccc-----acgcaaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataa 5389165  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||||    
T  5389166 ccacctaaaaacacccctagagataaaccaaccaaaacacatcaccacctaaaacaaactc 5389226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 41920883 - 41920735
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||| |||| |||||||||| ||| ||||||||||| || ||||||||  | | ||||||| |||||||||| |||||||||||||||    
T  41920883 caaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacctaaaaac 41920784  T
Q  113 acccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||| |||||||||||| ||||||| ||| |||||||||||||| ||||    
T  41920783 acccgtgaagataaaccaaccaaaatacaccaccacctaaaacaaactc 41920735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24659357 - 24659217
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||           ||||||||||||||||| | ||||||||| ||||||||||||||    
T  24659357 ttttttaatcagcaaatattattaaacgtcatccccgcaagacgc-----------gaaacaagatacaaatggtgccgcatatagacggtacaccataa 24659269  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    ||||| || ||  ||||||||||||||||||||||||||||| |||||||||    
T  24659268 ccaccaaacaaagcccctgaagataaacccaccaaaacacataaccacctaa 24659217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 46692519 - 46692623
Alignment:
Q  58 aaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaa-acacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    |||||||||| ||||| | ||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  46692519 aaacaagataaaaatggtgccgcataaagacggtacaccataaccacctaaaaaacacccctgaagataaaccctccaaaacacatcaccacctaaaaca 46692618  T
Q  157 gactc 161  Q
     ||||    
T  46692619 aactc 46692623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 27031496 - 27031633
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||| ||||| | ||||||||| |||||||||||||||| ||  | ||     
T  27031496 caaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacccccatacaaa 27031595  T
Q  113 acccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
     ||| |||||||||  || |||||||||||||||||||||    
T  27031596 gcccttgaagataa--cccccaaaacacatcaccacctaa 27031633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14320761 - 14320658
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||||| ||||| ||||| ||||||| |||| | ||||||||| |  |||||||| ||||||||||||||    
T  14320761 ttttttaatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataa 14320662  T
Q  101 ccac 104  Q
    ||||    
T  14320661 ccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 31971778 - 31971938
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  31971778 tttttgaatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 31971877  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  31971878 ccacctaaaaacacccctgaagataaacccaccaaaacacataaccacctaaaacaaactc 31971938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 5859926 - 5860085
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  5859926 tttttgaatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 5860025  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  5860026 ccacctaaaaacacccctaaagataatcccaccaaaacacatcaccacctaaaacagact 5860085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 44353207 - 44353367
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| | ||||||||| | ||||||||||||    
T  44353207 ttttttaatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataa 44353306  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  44353307 ccacctaaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactc 44353367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10244618 - 10244458
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||| | ||||||||| || |||||||||||    
T  10244618 ttttttaatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataa 10244519  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||    
T  10244518 ccacctaaaaacacccctgaagataagtccacgaaaacacatcaccacctaaaacaaactc 10244458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 47325528 - 47325682
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||| | | ||||||| ||||||||||||||    
T  47325528 ttttttaatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataa 47325627  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  47325628 ccacctaaaaaca-ctctgaagataaacccaccaaaacacatcaccacctaaaaca 47325682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 33434474 - 33434626
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||| | | | ||||| ||||||||||||||    
T  33434474 ttttttaatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataa 33434573  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaa 153  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  33434574 ccacctaaaaacacccctggaaataaacccaccaaaacacatcaccacctaaa 33434626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 3419042 - 3419197
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | | ||||||| |  |||||||||||||    
T  3419042 ttttttaatcgacaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgcataga--cggtacaccataa 3419139  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaga 158  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  3419140 ccacctaaaaacactcctgaagataaactcaccaaaacacaacaccacctaaaacaga 3419197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 37795425 - 37795274
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaa 109  Q
    ||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||||| |  |||   ||||||||||||||||||||||||||    
T  37795425 cggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaa 37795326  T
Q  110 aacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  37795325 aacacccatgaagataaacccacaaaaacatatcaccacctaaaacagactc 37795274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 37795753 - 37795602
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaa 109  Q
    ||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||||| |  |||   ||||||||||||||||||||||||||    
T  37795753 cggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaa 37795654  T
Q  110 aacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  37795653 aacacccatgaagataaacccacaaaaacatatcaccacctaaaacagactc 37795602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 25161246 - 25161088
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| |||||||| ||||   ||| |||| |||||||||||| |||||| | ||| ||||| ||||||||||||||    
T  25161246 ttttttaatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataa 25161147  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  25161146 ccacctaaaaaca-ccctggagataaacccaccaaaacacatcaccacctaaaacagact 25161088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 34391620 - 34391469
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| || ||||||||| ||| ||||||||||    
T  34391620 ttttttaatcagcaaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataa 34391521  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    ||||| || ||  |||||||||||||||||||||||||||||||||||||||    
T  34391520 ccaccaaacaaagcccctgaagataaacccaccaaaacacatcaccacctaa 34391469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 42454388 - 42454536
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| || ||||||||||||||||||||||    
T  42454388 gcaaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacctaaaaa 42454487  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
     | || ||||||||||||||||||||||||||   ||||||||||||||    
T  42454488 aatccttgaagataaacccaccaaaacacatccttacctaaaacagact 42454536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 3419321 - 3419456
Alignment:
Q  21 attaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctga 120  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||| | | ||||||| |  ||||||||||||||||||||||||||| |||||    
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgcataga--cggtacaccataaccacctaaaaacactcctga 3419418  T
Q  121 agataaacccaccaaaacacatcaccacctaaaacaga 158  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  3419419 agataaactcaccaaaacacaacaccacctaaaacaga 3419456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 38306656 - 38306538
Alignment:
Q  43 cgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacat 142  Q
    |||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  38306656 cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataaaccaaccaaaacacat 38306557  T
Q  143 caccacctaaaacagactc 161  Q
    |||||||||||||| ||||    
T  38306556 caccacctaaaacaaactc 38306538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 41089389 - 41089546
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||| | ||||||||||||||||| | |||| | |||||||  ||| ||||||||||||||||||||| || | ||||||||| ||||||||||||||    
T  41089389 tttttttatcggcaaatattattaaatgccatctctgcaagac--aaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataa 41089485  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  41089486 ccacctaaaaacacccatgaagataaatccaccaaaacacatcatcacctaaaacagactc 41089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 3867552 - 3867393
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||| | ||||||||||||||||||  |||||| |||||||| ||| ||| |||||||||||||||||||| | || |||||| ||||||||||||||    
T  3867552 tttttttatcggcaaatattattaaacttcatccc-gcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataa 3867454  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    | || ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  3867453 caacataaaaacacccctgaagataaactcaccaaaacacatcaccacccaaaacaaactc 3867393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 40726134 - 40726308
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatac--------------aaatgataccgcatataa 86  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||              ||||||| |  ||||||     
T  40726134 ttttttaatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagatacacgaaacaaaatacaaatgatgctacatatag 40726233  T
Q  87 acggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  40726234 acggtacaccataaccacctaaaaacacccctggagataaacccaccaaaacacattaccacctaaaacagactc 40726308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 6585324 - 6585179
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||| | || |||||| ||||||||||||||    
T  6585324 ttttttaatcagcaaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataa 6585225  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcacc 146  Q
    ||||| || || ||||||||||||||| ||||| ||||||||||||    
T  6585224 ccaccaaacaaaacccctgaagataaagccacctaaacacatcacc 6585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 43482331 - 43482183
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||| |||||||| | |||||||| ||||||||||| |||||||||||  | | ||||| | ||||||||||| |||||||||||||    
T  43482331 gcaaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaaaa 43482233  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    || || |  |||||||||||| |||||||| |||||||||||||||||||    
T  43482232 catccattgagataaacccacaaaaacacaacaccacctaaaacagactc 43482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 11378773 - 11378866
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccac 104  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||||||||||||||    
T  11378773 cggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacg-aataagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 48161684 - 48161808
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| |||||| ||||||| ||||||||||||| ||||| ||||||||  | ||||||||| |||| |||||||||    
T  48161684 ttttttaatcagcaaatattattaaacgtcatccctgcaagacacaagatatggacg-aacaaaatacaaatagtgccgcatatagacggcacaccataa 48161782  T
Q  101 ccacctaaaaacacccctgaagataa 126  Q
    |||||||| ||  |||||||||||||    
T  48161783 ccacctaacaaagcccctgaagataa 48161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35745475 - 35745621
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| |||| ||| || ||||||| |||||||||||||||||||||||| |  ||||          |||||||||    
T  35745475 ttttttaatcagcaaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca----------acaccataa 35745564  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagac 159  Q
    ||||| | | |  ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  35745565 ccacc-atacaagcccctgaagat-aacccaccaaaacacatcaccacctaagacagac 35745621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 31756325 - 31756384
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaat 72  Q
    |||||||||||||||| ||||||| |||| |||| || ||||||||||||| ||||||||    
T  31756325 caaatattattaaacgtcatccccacaagtcgcaggaaatggacgaaacaatatacaaat 31756384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 2392146 - 2392305
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  2392146 ttttttaatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 2392245  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  2392246 ccacctaaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaaaatagact 2392305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 2393909 - 2394068
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  2393909 ttttttaatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 2394008  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  2394009 ccacctaaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaaaatagact 2394068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 47236125 - 47235977
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| | ||||||||| |||||| |||||||||| |||||||    
T  47236125 gcaaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatctaaaaa 47236026  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  47236025 cacccctggagataaacccaccaaaatacatcaccacctaaaacagact 47235977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 19176944 - 19176784
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||| || |||||||||||  ||||||||||||| |||||||||| | ||||||||| ||||||||||||||    
T  19176944 ttttttaatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataa 19176845  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    | ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  19176844 cgacctaaaaatacccctgaagacaaacccaccaaaacacataaccacctaaaacagactc 19176784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45164291 - 45164132
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||   |||||||||||| ||||| ||||||| |||||||||||||||| | ||||||||| ||||||||||||||    
T  45164291 ttttttaatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataa 45164192  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  45164191 ccacctaaaaaca-ccctggagataaacccaccaaaacacatcaccacctaaaatagactc 45164132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 34475401 - 34475561
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||| ||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||| | || |||||| |||||| |||||||    
T  34475401 tttttgaatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataa 34475500  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  34475501 ccacctaagaacacccctggagataaactcaccaaaacacatcaccacctaaaacagactc 34475561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 31483318 - 31483158
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||||  ||||||| ||||||||||| |||| || |||||||||||||||| | | ||||||| ||||||||||||||    
T  31483318 tttttgaatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataa 31483219  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||    
T  31483218 ccacctaaaaacacccctggagataaactcaccaaaacacatcaccgcctaaaacaaactc 31483158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 40023224 - 40023370
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||  |||||||||||||||||   |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||     
T  40023224 caaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccaccaaacaaa 40023323  T
Q  113 acccctgaagataaacccaccaaaacacatcaccacctaaaacagac 159  Q
     |||||||||||||||||| |||||||||||||||||||| ||||||    
T  40023324 gcccctgaagataaacccatcaaaacacatcaccacctaagacagac 40023370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 30352115 - 30352230
Alignment:
Q  34 cccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaacccacc 133  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||    
T  30352115 cccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaaaacacccctgaagataagcccacc 30352214  T
Q  134 aaaacacatcaccacc 149  Q
    ||||||||||||||||    
T  30352215 aaaacacatcaccacc 30352230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 53248338 - 53248178
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| || |||||||||||||||| |||||||||||| || ||| ||||||| |||||||||||||||| |  ||||||||    |||||||||||    
T  53248338 ttttttaatcgacaaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataa 53248239  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||| ||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  53248238 ccatctaaaaacaaccctgaagataaccccacaaaaacacatcaccacctaaaacagactc 53248178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 17551395 - 17551236
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | | |||||||||||||||  ||||| |||||| ||| | |||| ||||||||| ||||||||| | ||||||||| || |||||||||||    
T  17551395 ttttttaatcagtaaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataa 17551296  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||    
T  17551295 ccacctaaaaacacctctgaaaaaaaacccaccaaaacacatcaccacctaaaagagact 17551236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 21343785 - 21343635
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| || |||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||||||| | ||||||||| |||||||| |||||    
T  21343785 ttttttaatcgacaaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataa 21343686  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    |||||||| |   ||| ||||||| |||||||||||||||||||||||||||    
T  21343685 ccacctaacatggcccgtgaagat-aacccaccaaaacacatcaccacctaa 21343635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 9583710 - 9583843
Alignment:
Q  15 aatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacac 114  Q
    |||||||||||||| |||| ||| ||||| |||| ||| |||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||| ||    
T  9583710 aatattattaaacgccatctccgtaagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaatac 9583809  T
Q  115 ccctgaagataaacccaccaaaacacatcaccac 148  Q
    || |||| ||||||||||||||||||||||||||    
T  9583810 ccttgaaaataaacccaccaaaacacatcaccac 9583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 43012779 - 43012655
Alignment:
Q  37 gcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaa 136  Q
    |||||||||||| |||| ||||||||| ||||||||| | ||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  43012779 gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcctgaagaaaaacccaccaaa 43012680  T
Q  137 acacatcaccacctaaaacagactc 161  Q
    | ||||||||| |||||||||||||    
T  43012679 agacatcaccatctaaaacagactc 43012655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 50305228 - 50305368
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||| |  |||||||| ||||||||||||||||| | || ||    
T  50305228 gcaaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataaccatcaaataa 50305327  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
      |||||||||||||||||||||||||||  ||||||||||    
T  50305328 agcccctgaagataaacccaccaaaacactacaccacctaa 50305368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 23327991 - 23328142
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | |||||||||||||||||  ||||| |||| ||||||| |||||||||||||||||| ||||| | ||||||||| ||||||||||||||    
T  23327991 ttttttaatcagcaaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataa 23328090  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    ||||| || ||  ||| ||| ||||||||||| |||| | ||||||||||||    
T  23328091 ccaccaaacaaagcccttgaggataaacccacgaaaatatatcaccacctaa 23328142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 37158743 - 37158618
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataa-acggt-acaccat 98  Q
    |||||||  ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||| | ||| |||| ||    
T  37158743 ttttttattcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatataatatggtaacactat 37158645  T
Q  99 aaccacctaaaaacacccctgaagata 125  Q
    |||||||||||||||||||||||||||    
T  37158644 aaccacctaaaaacacccctgaagata 37158618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 50560070 - 50559959
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||| ||||| ||| ||||| ||||||||||||| || ||     
T  50560070 caaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccaccaaacaaa 50559971  T
Q  113 acccctgaagat 124  Q
    |||| |||||||    
T  50559970 acccatgaagat 50559959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 45399223 - 45399119
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | |||||||||||||||||||||| ||| ||||||| || |||| ||||||||||||||||| | | ||||||||| ||||||||||||||    
T  45399223 ttttttaatcagcaaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataa 45399124  T
Q  101 ccacc 105  Q
    |||||    
T  45399123 ccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4463728 - 4463831
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||||| ||||||||||||| | ||||||| | ||||||||| ||||| ||||||||    
T  4463728 ttttttaatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataa 4463827  T
Q  101 ccac 104  Q
    ||||    
T  4463828 ccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 25506714 - 25506814
Alignment:
Q  2 tttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataac 101  Q
    ||||||| || |||||||||||||||  |||||||||||||| ||||||||  || |||||| ||||||||| | ||||||||| |||||||||||||||    
T  25506714 tttttaatcgacaaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacaccataac 25506813  T
Q  102 c 102  Q
    |    
T  25506814 c 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 39676762 - 39676669
Alignment:
Q  236 gatgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatcttgaatgttgataacttctcaaatgaaacca 329  Q
    ||||| || |||| ||||||||||||||||||| |||||||| ||| ||||||||||||||  ||||| ||||||||  |||||| || |||||    
T  39676762 gatgaaaaatgtcctaaaccacctaaaaacttcattgacaagttccctccaatcttttgaaatttgaaagttgataaaatctcaagtgtaacca 39676669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47439353 - 47439284
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaa 70  Q
    ||||| || |||||||||||| |||||| ||||||  ||||||  ||| |||||||||||||||||||||    
T  47439353 tttttaaatcggcaaatattactaaacgtcatccctacaagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 45399118 - 45399086
Alignment:
Q  120 aagataaacccaccaaaacacatcaccacctaa 152  Q
    |||||||||||||||||||||||||||||||||    
T  45399118 aagataaacccaccaaaacacatcaccacctaa 45399086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 39020997 - 39021046
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaa 63  Q
    |||||||||||||||| |||||| |||||||| ||||||||||| ||||||    
T  39020997 caaatattattaaacg-catccctgcaagacgtaagatatggaccaaacaa 39021046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 7105175 - 7105122
Alignment:
Q  107 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    |||||||| || ||||| |||||| ||||||||  |||||||||||||||||||    
T  7105175 aaaaacacgcccgaagacaaacccgccaaaacatgtcaccacctaaaacagact 7105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 39021050 - 39021093
Alignment:
Q  115 ccctgaagataaacccaccaaaacacatcaccacctaaaacagac 159  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||    
T  39021050 ccctgaagataa-cccaccaaatcacatcaccacctaagacagac 39021093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 27555574 - 27555734
Alignment:
Q  2 tttttaaccggcaaatattattaaacgacatcccc-gcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||  | ||||||||| | ||||||||||||    
T  27555574 tttttaatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataa 27555673  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27555674 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactc 27555734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 30964863 - 30964715
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||    
T  30964863 caaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacctaaaaac 30964764  T
Q  113 acccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||    
T  30964763 actcctggagataaacccaccaaaacacatcaccacctaaaacagactc 30964715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 8255465 - 8255305
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| |||||||||||||||||||  ||| ||||||||   ||| | ||||||| |||||||||||||||| ||||||||| |||||||| |||||    
T  8255465 ttttttaatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataa 8255366  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8255365 ccacctaaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactc 8255305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 8268883 - 8268723
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| |||||||||||||||||||  ||| ||||||||   ||| | ||||||| |||||||||||||||| ||||||||| |||||||| |||||    
T  8268883 ttttttaatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataa 8268784  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8268783 ccacctaaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactc 8268723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 35329445 - 35329302
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || |||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||||| | | ||||||| ||||||||||||||    
T  35329445 tttttgaatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataa 35329346  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatca 144  Q
    ||||||||||| |||| |||||||||||||||||||||||||||    
T  35329345 ccacctaaaaatacccatgaagataaacccaccaaaacacatca 35329302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 36689448 - 36689608
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| || ||||||||||||||   |||| ||||||||||| || ||||||||||| |||||||||||| || |||||||| ||||||||| ||||    
T  36689448 ttttttaatcgacaaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataa 36689547  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  36689548 ccacttaaaaacacccctgaagataaactcaccaaaacacatcaccatctaaaacatactc 36689608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30167206 - 30167368
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgat--accgcatataaacggtacaccat 98  Q
    |||||||| || |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||  |    ||||| ||||||||| ||    
T  30167206 ttttttaatcgacaaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactat 30167305  T
Q  99 aaccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  30167306 aaccatctaaaaataccactgaagataaacccaccaaaacacatcacatcctaaaacagactc 30167368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 20465005 - 20464872
Alignment:
Q  23 taaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaag 122  Q
    |||||| ||||| | ||||| ||||| |||| | ||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacctaaaaacacccctgaag 20464906  T
Q  123 ataaacccaccaaaacacatcaccacctaaaaca 156  Q
    ||||||||||||| | ||||||||||||||||||    
T  20464905 ataaacccaccaacatacatcaccacctaaaaca 20464872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 8705783 - 8705939
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||||  |||||||| || |||||||||  || |||||||||| | | ||||||| ||||||||||||||    
T  8705783 ttttttaatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataa 8705882  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||| |||||||    |||| ||||||||||||||||||||| ||||||    
T  8705883 ccacctaaaaacacccttgaagat----ccacaaaaacacatcaccacctaaaatagactc 8705939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 11281377 - 11281511
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaa 109  Q
    |||||||||||||| |||| |||| || ||||||||||||||||||||||||| |||| ||||| | | | ||||| |||||| ||||||||||||||||    
T  11281377 cggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccacctaaa 11281476  T
Q  110 aacacccctgaagataaacccaccaaaacacatca 144  Q
    |||||| |||||||||| ||||| |||||||||||    
T  11281477 aacacctctgaagataaccccactaaaacacatca 11281511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 4306142 - 4305994
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||| | |||||||| |||||||||| |||| |||||| |||||| ||||| | ||||||||| ||||||||||||||    
T  4306142 tttttgaatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataa 4306044  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    ||||||||||| | ||  || ||||| |||||||||||||||||||||||||    
T  4306043 ccacctaaaaaaatcc--gaggataatcccaccaaaacacatcaccacctaa 4305994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 7703124 - 7703018
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| |||||||||||||| |||| |||||| |||| |||||||||||| | ||||||||| ||||||||||||||    
T  7703124 ttttttaatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataa 7703026  T
Q  101 ccacctaa 108  Q
    ||||||||    
T  7703025 ccacctaa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 2826208 - 2826071
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||| |||| | |||||||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||| || ||| |    
T  2826208 gcaaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc-cccaaaca 2826110  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
     | ||||||||||||  || ||||||||||||| |||||||    
T  2826109 aaaccctgaagataa--cctccaaaacacatcatcacctaa 2826071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 31050315 - 31050453
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacc-taaaa 110  Q
    ||||||||||||||||| | ||||||||||| || |  ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| || ||    
T  31050315 gcaaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccaccatacaa 31050414  T
Q  111 acacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
     ||  ||||||||| ||| || ||||||||||||||||||||    
T  31050415 gca--cctgaagat-aactcatcaaaacacatcaccacctaa 31050453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 46698422 - 46698525
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| |||||  | |||||||||| ||||| |||||||||||||||||| | ||||||||| ||||||||||||||    
T  46698422 ttttttaatcagcaaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataa 46698521  T
Q  101 ccac 104  Q
    ||||    
T  46698522 ccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 35341006 - 35341143
Alignment:
Q  13 caaatattattaaacgacatcccc--gcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaa 110  Q
    |||||||||||||||| |||||||  |||||||||||  |||||||||||||||||||||||| | || |||||| |||||||||||||||| ||  | |    
T  35341006 caaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacccccggaca 35341105  T
Q  111 acacccctgaagataaacccaccaaaacacatcaccacct 150  Q
    |  |||||||||||||  || ||| |||||||||||||||    
T  35341106 aagcccctgaagataa--cccccataacacatcaccacct 35341143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9750204 - 9750116
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacgg 90  Q
    |||||||| || |||||||||||||||| |||||||||||||||| || | |||||||||||||||||||||| | ||||||||| ||||    
T  9750204 ttttttaatcgacaaatattattaaacgtcatccccgcaagacgc-aggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 49528514 - 49528421
Alignment:
Q  11 ggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccac 104  Q
    ||||||||| |||||||  || |||||||| ||  ||| |||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||    
T  49528514 ggcaaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 52868766 - 52868859
Alignment:
Q  13 caaatattattaaa-cgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacc 105  Q
    |||||||||||||| || ||||  | ||||||| ||| |||| |||||  |||||||||||| |  ||| |||| |||||||||||||||||||    
T  52868766 caaatattattaaaacgtcatcttcacaagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 3254395 - 3254235
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||| |  ||||||||||     
T  3254395 ttttttaatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatag 3254296  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  3254295 ccacctaaaaacacccctgaaaataaacccaccaaaatacatcaccacctaaaacagactc 3254235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 15944437 - 15944277
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| |||||| | |||||||||| |||||||  || |||||||||||| |  |||||||| ||||||||||||||    
T  15944437 ttttttaatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataa 15944338  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
     |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15944337 acacctaaaaatacccctgaatataaacccaccaaaacacatcaccacctaaaacagactc 15944277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10542268 - 10542109
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||| |||||||||||| || |||||| |||||| |||||||||| ||||||||||||||||| | | ||||||||| ||| ||||||||||    
T  10542268 tttttgaatcggaaaatattattaagcgccatccc-gcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataa 10542170  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||||||||||||||||| ||||  ||| |||||||||||||| ||||    
T  10542169 ccacctaaaaacacccctgaagataaacccatcaaattacaccaccacctaaaacaaactc 10542109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 3117932 - 3117777
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||||||  |||||||||||||||||| ||| || |||||||| ||| ||||||||||| |||||||||||| | | ||||||| ||| ||||||||||    
T  3117932 ttttttaataggcaaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataa 3117833  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    ||||||||||||||| |  |||||||||| |||||| |||||||||||||||||||    
T  3117832 ccacctaaaaacacctccaaagataaacctaccaaaccacatcaccacctaaaaca 3117777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 14663414 - 14663358
Alignment:
Q  105 ctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  14663414 ctaaaaacacccctggagataaacccacgaaaacacatcaccacctaaaacagactc 14663358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 15132494 - 15132573
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggt 91  Q
    ||||||||||||||||| ||||  ||||||||| ||| ||||||| |||||||||||||||||| ||| ||||| |||||    
T  15132494 gcaaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 33697788 - 33697843
Alignment:
Q  49 atatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccac 104  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  33697788 atatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 14663480 - 14663421
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatg 73  Q
    ||||||||||||||||| ||| || |||||||| ||| |||||||| |||||||||||||||    
T  14663480 gcaaatattattaaacgtcat-cctgcaagacgaaaggtatggacg-aacaagatacaaatg 14663421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 39338504 - 39338665
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| ||||  || |||||||||  |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  39338504 ttttttaatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 39338603  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatca-ccacctaaaacagactc 161  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39338604 ccacctgaaaacacccctgaagataaacccaccaaaacacatcacccacctaaaacagactc 39338665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 387614 - 387454
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| || || ||||||||||||| |||| ||||||| |||| | |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  387614 ttttttaatcgacagatattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 387515  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  387514 ccacttaaaaacacccatgaagataaacccaccaaaacacatcaccacctaaaacagactc 387454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 41877207 - 41877350
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| |||||    
T  41877207 caaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacctgaaaac 41877306  T
Q  113 acccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    |||||||||||||||||| | ||||||||||||  |||||||||    
T  41877307 acccctgaagataaaccctctaaaacacatcactgcctaaaaca 41877350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10524535 - 10524376
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||| || ||| |||||||||||| |||||||||||||| ||||||||| | | ||||||| | ||||||||||||    
T  10524535 ttttttaatcggcaaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataa 10524437  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||||||||||||||||||||||||||| |||||  |||||||| ||||    
T  10524436 ccacctaaaaacacccctgaagataaacccaccaaaacacgtcaccgtctaaaacaaactc 10524376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 14436921 - 14437059
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||| ||| ||| |    
T  14436921 gcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacaacc-aaaca 14437019  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
      | ||||||||| ||||||||||| ||||||| |||||||    
T  14437020 agctcctgaagat-aacccaccaaatcacatcatcacctaa 14437059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 5254679 - 5254540
Alignment:
Q  12 gcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaa 111  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||||||||||| | |||||||||| | ||||||||| |||||||||||||||| || || ||    
T  5254679 gcaaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaata-gatacaaatggtgccgcatatagacggtacaccataacctccaaacaa 5254581  T
Q  112 cacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
      | | |||||||||||||||||||||||||||||||||||    
T  5254580 agctcatgaagataaacccaccaaaacacatcaccacctaa 5254540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 14106166 - 14106314
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| ||||| ||||||||||| | |||| ||||||||||||| ||||| | ||||||||| ||||||||||||||    
T  14106166 ttttttaatcagcaaatattattaaacgccatcctcgcaagacgcagggtatg-acgaaacaagatagaaatggtgccgcatatagacggtacaccataa 14106264  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    ||||| ||| |  ||||||||||| |||||||||||||||| ||||||||||    
T  14106265 ccacc-aaacaagcccctgaagat-aacccaccaaaacacaacaccacctaa 14106314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 22888552 - 22888694
Alignment:
Q  17 tattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacaccc 116  Q
    |||||||||| | |||||| |||||||||||  |||||| |||||||| || ||||| | || |||||| |||||| | |||||||| |||| |||||||    
T  22888552 tattattaaatgtcatccc-gcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataaccaactaagaacaccc 22888650  T
Q  117 ctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  22888651 ctgaagataaacccaccaaaacgcatcaccacctaaaacagact 22888694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 14405636 - 14405487
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | |||||||||||||||||  || || |||||||| ||| |||| ||||| ||||||||||||| | | ||||||| ||||||||||||||    
T  14405636 ttttttaatcagcaaatattattaaacgttattcctgcaagacgtaaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataa 14405538  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    |||||||| ||  ||||| ||||| |||| ||||||||||||||||||||||    
T  14405537 ccacctaacaaagcccctaaagat-aacctaccaaaacacatcaccacctaa 14405487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 17116553 - 17116680
Alignment:
Q  23 taaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaag 122  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||| |||||          |||||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataac----------cacccctgaag 17116642  T
Q  123 ataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    ||||| ||||  |||||||||||| |||||||||||||    
T  17116643 ataaatccacagaaacacatcaccgcctaaaacagact 17116680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 43816090 - 43816191
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  43816090 tttttgaatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataa 43816189  T
Q  101 cc 102  Q
    ||    
T  43816190 cc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 13512495 - 13512584
Alignment:
Q  14 aaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataacca 103  Q
    ||||||||||||||| ||| ||||||||||||||  |||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 15457891 - 15457817
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatat 84  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  15457891 cggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7874715 - 7874582
Alignment:
Q  1 ttttttaaccggcaaatattattaaa-cgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccata 99  Q
    |||||||| | ||||||||||||||| || ||||| |||||||| |||| ||| ||| ||||||||||||||||   ||||||||| |||||||||||||    
T  7874715 ttttttaatcagcaaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccata 7874616  T
Q  100 accacctaaaaacacccctgaagataaacccacc 133  Q
    |||||| || ||  |||||||| |||||| ||||    
T  7874615 accaccaaacaaagcccctgaatataaactcacc 7874582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3745779 - 3745676
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||| | |||||||  |||||||||| |||||||||||||||||||||||| | | ||||||| | |||||| |||||    
T  3745779 tttttgaatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataa 3745680  T
Q  101 ccac 104  Q
    ||||    
T  3745679 ccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 7461113 - 7460965
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||   ||| |||||||||| ||||||||| |   ||||||| || |||||||||||    
T  7461113 ttttttaatcagcaaatattattaaacgtcatccccgcaagacgcagagtat-gacgaaacaaaatacaaatggtgttgcatatagacagtacaccataa 7461015  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaa 152  Q
    ||||| ||| |  ||||||||||| ||||||||||| |||| |||| |||||    
T  7461014 ccacc-aaacaagcccctgaagat-aacccaccaaatcacaacaccgcctaa 7460965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 45311456 - 45311550
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccac 104  Q
    |||| |||||||||||||| || |||||||||| |||||  | ||||||||||||||||||||| | || |||||| |||| |||||||||||||    
T  45311456 cggccaatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9823767 - 9823694
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatga 74  Q
    |||||||| ||||||||||||||||||| |||| ||||||||| |||| |||| | ||||||||||||||||||    
T  9823767 ttttttaatcggcaaatattattaaacgccatctccgcaagacacaaggtatgaatgaaacaagatacaaatga 9823694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 25281022 - 25281095
Alignment:
Q  81 atataaacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaa 154  Q
    ||||||| ||||||||||||||||||||||||||||  ||| ||||||  |||||||||| |||||||||||||    
T  25281022 atataaatggtacaccataaccacctaaaaacaccctcgaaaataaactaaccaaaacacgtcaccacctaaaa 25281095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 43248882 - 43249017
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||| ||||| | |||||| |||| |||||||||||||||||| |||||   ||||||||| |||||| | ||||||| || || ||     
T  43248882 caaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacccccaaacaaa 43248981  T
Q  113 acccctgaagataaacccaccaaaacacatcaccacctaaaa 154  Q
     ||  ||||||      |||||||||||||||||||||||||    
T  43248982 gccaatgaaga------caccaaaacacatcaccacctaaaa 43249017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 25280971 - 25281024
Alignment:
Q  14 aaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagata 67  Q
    ||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||    
T  25280971 aaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagata 25281024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 25281085 - 25281145
Alignment:
Q  100 accacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    |||||||||||||||||  ||| ||||||  |||||||||| |||||||||||||||||||    
T  25281085 accacctaaaaacaccctcgaaaataaactaaccaaaacacgtcaccacctaaaacagact 25281145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 7455676 - 7455601
Alignment:
Q  14 aaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacgg 90  Q
    ||||| ||||||||| |||||||||||||||| || |||| |||||| |||||||||||| | ||||| ||| ||||    
T  7455676 aaataatattaaacgtcatccccgcaagacgc-aggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 9e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 18593680 - 18593520
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| | ||| | ||||||||| ||||||||||||||    
T  18593680 tttttgaatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataa 18593581  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||    
T  18593580 ccacctaaaaacacccctgaagataaacccgccaaaacacatcaccacctaacacaaactc 18593520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 34378537 - 34378382
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| || |||||||||||||||| |||| ||||||||||||||  |||||||| || ||||||||||| | ||||||||| ||||||||||||||    
T  34378537 ttttttaatcgacaaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataa 34378438  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 156  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34378437 ccatctaaaaacacccctgaagataaacccacaaaaacacatcaccacctaaaaca 34378382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7161657 - 7161817
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||  |   ||||||| ||||||||||||||    
T  7161657 tttttgaatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataa 7161756  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
     |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  7161757 tcacctaaaaacacccctgaatataaacccaccaaaacacatcactacctaaaacagactc 7161817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 29087873 - 29087756
Alignment:
Q  44 gcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacatc 143  Q
    ||||| |||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  29087873 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacctaaaaacaaccctgaagataaacccaccaaaacacatc 29087774  T
Q  144 accacctaaaacagactc 161  Q
    | ||||||||||||||||    
T  29087773 agcacctaaaacagactc 29087756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 5656749 - 5656896
Alignment:
Q  14 aaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaaca 113  Q
    ||||||||||||||| |||| |||||||||||||| |||| |||||| |||||||||||||| ||||||||| ||||||||  |||||||||||||||||    
T  5656749 aaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaaaaca 5656848  T
Q  114 cccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    | ||| |||||||| ||||||||||||  ||||||||||||| |||||    
T  5656849 caccttaagataaatccaccaaaacacgccaccacctaaaactgactc 5656896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 698805 - 698658
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | |||||||||||||||||||||| | |||||||| ||| |||||| |||| | |||||||||| | ||||||||| ||||||||| ||||    
T  698805 ttttttaatcagcaaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataa 698706  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccac 148  Q
    |||||||||||||||| |||||||||||| |||||| |||||||||||    
T  698705 ccacctaaaaacacccttgaagataaacctaccaaaccacatcaccac 698658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7453026 - 7452895
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||||||||||||||||||  |||||  |||||||||||| ||||||| || ||||||||||||| | ||||||||| ||||||||||||||    
T  7453026 ttttttaatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataa 7452927  T
Q  101 ccacctaaaaacacccctgaagataaacccac 132  Q
    ||||||||||||||  ||| |||| |||||||    
T  7452926 ccacctaaaaacacatctggagattaacccac 7452895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 18313297 - 18313447
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| ||| ||||||||||||||| ||| || | |||||||||| |||||| |||||||||| |||||| | ||||||||| ||||||||||        
T  18313297 ttttttaatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacc---- 18313392  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
          ||||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  18313393 ------aaaaacaccctcggagataaacccaccaaaacacatcaccacctaaaacagactc 18313447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 18255093 - 18255192
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    ||||| || ||||||||||| |||||||  ||||||| |||| ||| | ||| |||||||||||||||||||  | ||||||||| |||||||| |||||    
T  18255093 tttttgaatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 41250893 - 41250944
Alignment:
Q  58 aaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaa 109  Q
    |||||||||| ||||| | ||||||||| |||||||||||||||||| ||||    
T  41250893 aaacaagatataaatggtgccgcatatagacggtacaccataaccacgtaaa 41250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 18255189 - 18255227
Alignment:
Q  123 ataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  18255189 ataaatccaccaaaacacatctccacctaaaacagactc 18255227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 8297811 - 8297751
Alignment:
Q  104 cctaaaaacacccctgaagataa-acccaccaaaa--cacatcaccacctaaaacagactc 161  Q
    ||||||||||||||||| ||||| | |||||||||  ||||||||||||||||||| ||||    
T  8297811 cctaaaaacacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactc 8297751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 48773 - 48614
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||||| | |||||||||||| |||| | |||||||||||| |||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||    
T  48773 ttttttaatccgcaaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataa 48674  T
Q  101 ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 160  Q
    |||||||||||||||| | ||||||| || |||||||||||||| |||||||||||||||    
T  48673 ccacctaaaaacacccttaaagataatcctaccaaaacacatcatcacctaaaacagact 48614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 2344 - 2476
Alignment:
Q  29 acatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaacacccctgaagataaac 128  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  2344 acatccccacaagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaac 2443  T
Q  129 ccaccaaaacacatcaccacctaaaacagactc 161  Q
    |||||||| ||||||||||||||||||| ||||    
T  2444 ccaccaaaccacatcaccacctaaaacaaactc 2476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 19356 - 19196
Alignment:
Q  1 ttttttaaccggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataa 100  Q
    |||||| | ||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  19356 tttttttatcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 19257  T
Q  101 -ccacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc 161  Q
     ||||||||||| |   ||||||||||||||||||||| |||||||||||||||||||||||    
T  19256 cccacctaaaaa-aaatctgaagataaacccaccaaaatacatcaccacctaaaacagactc 19196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 6131 - 5989
Alignment:
Q  13 caaatattattaaacgacatccccgcaagacgcaagatatggacgaaacaagatacaaatgataccgcatataaacggtacaccataaccacctaaaaac 112  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| | ||| ||||| ||| |||| |||||||||||||||||    
T  6131 caaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaaaac 6032  T
Q  113 acccctgaagataaa-cccaccaaaacacatcaccacctaaaa 154  Q
    ||| ||||||||||| ||||| |||||||||||||||||||||    
T  6031 acctctgaagataaaccccacaaaaacacatcaccacctaaaa 5989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 35476 - 35526
Alignment:
Q  10 cggcaaatattattaaacgacatccccgcaagacgcaagatatggacgaaa 60  Q
    |||||||||||||| |||| |||||||| |||||| ||| |||||||||||    
T  35476 cggcaaatattattgaacgtcatccccgtaagacgtaaggtatggacgaaa 35526  T

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